Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq7 87.8 1e-12 >seq7 Length=127721098 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || || || || || || | || || || || ||||||||||| || || ||||||||| Sbjct 39037845 CAGTTCTATGTAGCCAACGAGGAGTTATCTTGCCAAATGTATCAGCGCTCTGCTGATATG 39037786 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||||||| || || || |||||| |||||| || || || | |||||||| ||| Sbjct 39037785 GGCTTGGGTGTGCCATTTAACATTGCATCTTATGCTCTCCTGACATGCATGATTGCTCAT 39037726 Query 20551 GTT 20553 ||| Sbjct 39037725 GTT 39037723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398817082416955