Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq4 93.3 9e-14 >seq4 Length=137675496 Score = 93.3 bits (102), Expect = 9e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || || |||| ||||| |||||||| ||||||| || |||||| | ||| || Sbjct 106876610 GACTTTGACTATGATTACTTTGGCTTCAAAACCCTGGAGAGGTCTTATCTCTTGAAAGTT 106876669 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || ||| | | ||| | |||||||||||| ||| | || ||||| || ||||| Sbjct 106876670 CAAGGGAAGGTTATAGAAAGGCCTCAGCACATGTTAATGAGGGTTGCTGTTGGAATTCAT 106876729 Query 248929 AAGGATGACATAGA 248942 ||||||||||| || Sbjct 106876730 AAGGATGACATTGA 106876743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1072728813152192