Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq9 152 5e-32 seq1 113 4e-20 >seq9 Length=96604005 Score = 152 bits (168), Expect = 5e-32 Identities = 374/562 (67%), Gaps = 5/562 (1%) Strand=Plus/Minus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 || || || |||||||| || || || ||||||| || | |||||||| || ||| Sbjct 49336393 AAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 49336334 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 ||||| ||||| || || | ||||||||||||||||| ||| ||| |||||| || Sbjct 49336333 AATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAA 49336274 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14380 || || ||||| || |||||| || ||||| ||||| | || | | || | || Sbjct 49336273 AAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCG-TC 49336215 Query 14381 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14440 | |||||||| ||||||| || | |||||| | | | || || || || || Sbjct 49336214 G--ATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 49336157 Query 14441 TTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14500 || | | | | ||| || | | | | ||||| || || | ||| | || ||| Sbjct 49336156 CGGAAAAGACGGTTCTTTTCGTCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 49336097 Query 14501 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14560 || || ||||| || ||||| ||||| || || |||||||||||| | || || || Sbjct 49336096 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAG 49336037 Query 14561 CATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14620 ||| |||||| || | | || | || ||| ||||| ||||| || Sbjct 49336036 ATTTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCG 49335977 Query 14621 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAA 14680 |||||||| || | | || |||| |||| ||||| ||| | |||| || ||| Sbjct 49335976 GCAAAAAAGGCGAGAACGTGACTAATGAAGTGGTGCTCGTCAGCGGTGAGAGCTTCCCAG 49335917 Query 14681 TCGGCTAA-ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTT 14739 | | | || | | ||| ||||| ||||| || | |||||||| || | ||||| Sbjct 49335916 T-GACGAAGAACGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTT 49335858 Query 14740 TTTATACATTACCCATATTTCT 14761 || |||||| |||||| |||| Sbjct 49335857 CTTGTACATTTCCCATACTTCT 49335836 >seq1 Length=147124936 Score = 113 bits (124), Expect = 4e-20 Identities = 414/645 (64%), Gaps = 29/645 (4%) Strand=Plus/Plus Query 13913 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13972 || ||||| || | |||||| || || ||||| || ||||| |||| || ||| || | Sbjct 98686984 TTCTGATACTCTCCAACTCTCTTCTCGAAGAAATTGGTTTTCCCTTGCAATGAAATTAGT 98687043 Query 13973 TCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGT 14032 ||||| ||||||| || || | | | ||| ||| || | |||| || || Sbjct 98687044 TCCATCCAATCAAAAGGGTTAGCCGCATTGTACATTTTGCCATACCCTAAAGCTCCTAAC 98687103 Query 14033 AATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 14092 || | |||||||| ||||||||| |||||| ||| || |||| |||||| || | || Sbjct 98687104 AACCGATCCGCAACGAACTCAATGTATTGACTCATCAACTCACCATTCATCCCAACTAAC 98687163 Query 14093 TTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATA 14152 ||||| | | || ||| || | |||||| |||| || || | | || Sbjct 98687164 GCGCAAGGAAGAGCGTCGCATACAAACTCCCTCTCTATATACACCGCATCACTCACTATT 98687223 Query 14153 ATCGTAATAAT---TTCA-TTAG---------AAGGAGGATATTTTAGATGTTTAAAAAT 14199 | | | |||| |||| |||||| ||| || | | Sbjct 98687224 CCCTTCACGCGCTCTTCACTTAGCTTTGACTGAAGGAG--------AGA-GT----ACAG 98687270 Query 14200 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 14259 || || ||||| || ||||| || || ||||||| | || | |||||||| || || Sbjct 98687271 CAAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGT 98687330 Query 14260 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA 14319 |||||| ||||| || || || ||||||||||||||||| || ||| ||||| || Sbjct 98687331 TAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCGGAGAA 98687390 Query 14320 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14379 ||||| || || || ||| || || ||||| ||||| |||| | | | | | Sbjct 98687391 AAATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCCGCCG-T 98687449 Query 14380 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14439 || |||||||| |||||| || | |||||| | | || |||||| |||| Sbjct 98687450 CG--ATCCATTTGAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGC 98687507 Query 14440 ATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14499 | || | | | || || | | | | || || || || | || | ||||| Sbjct 98687508 GTGGAAGAGGCGGTTTTTTTCGGTGGCATCTTTGATATAAGTTTCGAGGAGGAGACTATA 98687567 Query 14500 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA 14544 ||| |||||||| || || || || || || || || |||||||| Sbjct 98687568 CATCTCAGAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAA 98687612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481890874714920