Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq11 109 4e-19 seq7 107 1e-18 seq10 86.0 5e-12 >seq11 Length=105699404 Score = 109 bits (120), Expect = 4e-19 Identities = 166/236 (70%), Gaps = 18/236 (8%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | |||||| || || ||||| |||||||| || || ||| Sbjct 76983030 CCACCACGGAGACGAAGAACAAGGTGAAGGGTAGACTCTTTCTGAATGTTATAATCAGCC 76982971 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | |||||||||||||||||| ||| |||| || ||||| ||||| || Sbjct 76982970 AAAGTCCTCCCATCTTCCAATTGTTTGCCGGCAAAGATGAGCCTTTGCTGATCAGGTGGG 76982911 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG-- 18276 | ||||||||||| ||| | |||| | |||| ||||| || |||| Sbjct 76982910 ATTCCTTCCTTATCCTGAATCT-TTGCCT--------TAACATTGTCAATGGTATCGGAG 76982860 Query 18277 -TTTCA------ATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| | |||||| ||||||| ||||| || || |||||||| ||||| Sbjct 76982859 CTTTCAACCTCCAAGGTGATTGTTTTGCCTGTCAAAGTCTTGACAAAAATCTGCAT 76982804 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || || | || | |||||| || ||||| ||||| || || || || ||| Sbjct 76982802 CCTCCACGAAGCCTCAAAACAAGGTGAAGGGTGGATTCCTTTTGGATATTATAATCAGCC 76982743 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | |||||||||||||||||| || |||| | | ||||| || || Sbjct 76982742 AAGGTCCTCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGCTGTTGGTCAGGTGGG 76982683 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || ||| | ||| || | | | ||||| |||| | Sbjct 76982682 ATTCCTTCCTTGTCTTGAATCTTGGCCTTAACGTTGTCGATGGTGTCGGAACTCTCGACT 76982623 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | |||||||| || ||||| ||||| |||||||| Sbjct 76982622 TCGAGGGTGATGGTCTTGCCGGTTAAGGTTTTGACAAAGATTTGCAT 76982576 >seq7 Length=127721098 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||| ||| |||| |||||| || |||||||| ||||||||||||||||| Sbjct 86219930 CCGCCACGAAGTCGAAGAACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGGCT 86219871 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| || | ||||||||| ||| ||||||| || || |||||| || Sbjct 86219870 AGCGTGCGGCCATCCTCAAGTTGTTTGCCAGCAAAGATAAGCCTCTGCTGATCCGGTGGG 86219811 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| || | ||| || | ||| ||||| ||| Sbjct 86219810 ATCCCTTCCTTATCTTGGATCTTAGCCTTCACATTATCAATGGTGTCTGAACTCTCCACC 86219751 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | ||||| || | ||||| ||||| |||||||| Sbjct 86219750 TCGAGGGTGATGGTCTTGCCAGTGAGGGTTTTAACAAAGATTTGCAT 86219704 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | ||| || | ||| || || || |||||||||||||||||||| || Sbjct 44510184 CCACCCCTGAGACGAAGCACAAGGTGGAGGGTAGACTCTTTTTGAATGTTGTAGTCAGCA 44510243 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||||| ||| || || ||| ||||||| || ||||| || || Sbjct 44510244 AGGGTGCGACCATCTTCCAGTTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCAGGAGGG 44510303 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| || | |||||| | ||| ||||| | || Sbjct 44510304 ATCCCTTCCTTATCCTGGATCTTAGCCTTGACATTATCAATTGTGTCGGAGCTTTCAACC 44510363 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| | ||||| || | ||||| || || || ||||| Sbjct 44510364 TCAAGGGTGATTGTCTTGCCAGTGAGGGTTTTCACGAAGATCTGCAT 44510410 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| || | ||| || || |||||||| || ||||||||||| |||| || | | ||| Sbjct 44542370 AAGGACAAGGTGCAGAGTCGATTCTTTCTGGATGTTGTAGTCTGCCAAGGTCCTTCCATC 44542429 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||| | ||| || || ||| |||| | || || || || | ||| | ||||||||||| Sbjct 44542430 TTCAAGTTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCTAGGGGGATTCCTTCCTTATC 44542489 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGC--TCGGTTTCAATGGTGATG 18290 || | ||| || | ||| | ||| ||| || || ||| | ||||| Sbjct 44542490 TTGGATCTTGGCCTTCACATTATCAATAATGT--CCGAGCTTTCAACTTCCAAAGTGATC 44542547 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || || |||||||| || |||||||||||||| Sbjct 44542548 GTCTTTCCTGTCAATGTCTTCACAAAAATTTGCAT 44542582 >seq10 Length=114683840 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| ||| | ||| || | ||| || || || || ||||| |||||||||||||| Sbjct 38459766 CCACCCCTTAGACGAAGGACTAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCA 38459707 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||| || | |||||| || ||| | ||||| || ||||| || || Sbjct 38459706 AGAGTTCGGCCATCCTCGAGTTGTTTTCCGGCAAAAATAAGCCTCTGTTGGTCTGGAGGA 38459647 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||| || || |||| |||||| | ||| ||| || | || Sbjct 38459646 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTATCAATAGTATCGGAGCTTTCCACC 38459587 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| |||| || || | ||||| ||||| || ||||| Sbjct 38459586 TCAAGGGTGATGGTTTTACCAGTAAGGGTTTTCACAAAGATCTGCAT 38459540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378995318731155