Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq11 91.5 1e-13 seq12 89.7 4e-13 >seq11 Length=105699404 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 |||||| || ||||| ||||||||||||||||| || || ||| |||| ||||| ||| Sbjct 76982575 CATGCAAATCTTTGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGA---GAG 76982631 Query 24891 ---CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGA 24947 ||||| | || | ||||||| || ||| | || ||||| | || ||| Sbjct 76982632 TTCCGACACCATCGACAACGTTAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCTGA 76982691 Query 24948 CCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTA 25007 ||| || ||||| || | || ||||||||| |||||||| | ||| || ||||| Sbjct 76982692 CCAACAGCGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGAGGACCTTGGCTGATTA 76982751 Query 25008 CAGCATACAGAAAGAGGCCACGCTTCA 25034 | || || || || |||| ||||| Sbjct 76982752 TAATATCCAAAAGGAATCCACCCTTCA 76982778 >seq12 Length=146008498 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || ||||||||||||||||| || || ||| |||| ||||| |||| Sbjct 24218760 ATGCAGATCTTCGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGA---GAGC 24218816 Query 24892 ---GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 |||| | || | ||| ||| |||||| | || |||||| | || ||| Sbjct 24218817 TCTGACACCATCGATAATGTAAAGTCTAAAATTCAAGACAAGGAAGGCATCCCACCAGAC 24218876 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 ||||| ||| | || | || |||||||| || ||||| | || || ||||||| Sbjct 24218877 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTCGAAGACGGCCGTACCTTGGCCGATTAC 24218936 Query 25009 AGCATACAGAAAGAGGCCACGCTTCA 25034 | ||| ||||| || |||| || || Sbjct 24218937 AACATCCAGAAGGAATCCACCCTCCA 24218962 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/206 (69%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG- 24890 |||||||| || || ||||||||||||||||| || || ||| |||| ||||| ||| Sbjct 24218532 ATGCAGATCTTCGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGA---GAGC 24218588 Query 24891 --CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 ||||| | || | ||| ||| ||||| | || |||||| | || ||| Sbjct 24218589 TCCGACACCATCGATAATGTGAAGTCTAAAATCCAAGACAAGGAAGGCATCCCACCAGAC 24218648 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 ||||| ||| | || | || || ||||| || |||||| | || || ||||||| Sbjct 24218649 CAGCAGCGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCGTACCTTGGCCGATTAC 24218708 Query 25009 AGCATACAGAAAGAGGCCACGCTTCA 25034 | ||| ||||| || |||| || || Sbjct 24218709 AACATCCAGAAGGAATCCACCCTCCA 24218734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417919507904480