Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq9 176 6e-39 seq1 149 8e-31 seq2 100 4e-16 seq4 87.8 2e-12 >seq9 Length=96604005 Score = 176 bits (194), Expect = 6e-39 Identities = 565/871 (65%), Gaps = 8/871 (1%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 ||||| || || || || | ||| ||||| ||||| ||||| |||| ||| ||||| | Sbjct 49336681 TTTTGATACTCTCCAACTCTTTTCTCGAAGAAATTGGTTTTCCCTTGCAACGATATCAGT 49336622 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| ||||||| || ||| || ||||| || ||| | || || | | | Sbjct 49336621 TCCATCCAATCAAATGGGTTGACCACGTTGTACATCTTTCCGTACCCTAACGCTCCCAAC 49336562 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 || | ||| || ||||| || || || |||| | || | ||||| || | | Sbjct 49336561 AACCGATCCGCTACGAACTCGATGTACTGACTCATTAACTCGCCGTTCATCCCAACCAAC 49336502 Query 33471 TTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 || ||||| | || || ||| | | | | | ||| ||||| | ||| | Sbjct 49336501 GCGCAGGGCAGAGCATCGCA-TACGAACTCCCTCT-CTATGTCCACCGCGTCCCTTACTA 49336444 Query 33529 TAAATCTAACGGTTTCTTCACTCGG--TGGATGTAATAAATGTTTAAACATCAAACATGC 33586 | ||| ||| |||||||||| | | || | | | | || || ||| || || Sbjct 49336443 TCCCTCTCACGCGTTCTTCACTCAGCTTTGACCTGAGGAGAGAGTA--CAGCAAGCAAGC 49336386 Query 33587 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGG 33646 |||||| ||||| ||||| || |||| ||||| ||||| || || || | |||||| Sbjct 49336385 GAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAATCCGGG 49336326 Query 33647 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCC 33706 ||||| || | |||||| | ||||||||||| | ||| |||||| || ||||| || Sbjct 49336325 CATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAGATCCC 49336266 Query 33707 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTT 33766 ||||| |||||| || || | | || | || | | | | | ||||| || Sbjct 49336265 CTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGTCGATCCATTT 49336206 Query 33767 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33826 |||||| ||||| || || ||||| |||| ||| || ||||| || ||| Sbjct 49336205 CATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCGCGGAAAAGACG 49336146 Query 33827 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 33886 ||| ||||| | |||||| | ||||| |||| | ||||| ||||| || || || Sbjct 49336145 GTTCTTTTCGTCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTACATCTCGGAGTG 49336086 Query 33887 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 || ||||| || || || || || || || ||| | ||||||| || || || || Sbjct 49336085 GATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAGATTTGGACCTC 49336026 Query 33947 TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGC 34006 | | || || | || | || ||| ||||| ||||| ||| |||||||| || Sbjct 49336025 TTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCGGCAAAAAAGGC 49335966 Query 34007 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 34066 | || || | || || | | ||||| | || || | ||| | | | | | Sbjct 49335965 GAGAACGTGACTAATGAAGTGGTGCTCGTCAGCGGTGAGAGCTTCCCAGTGACGAAGAAC 49335906 Query 34067 TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 34126 ||| | ||| ||||| || | |||||||| || || || || || || ||||| | Sbjct 49335905 GGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACATTTC 49335846 Query 34127 CCAGATGTCATGATATTGGATTGGGAAAATA 34157 ||| | || | |||||||| ||||| ||| Sbjct 49335845 CCATACTTCTGGGTATTGGATCGGGAACATA 49335815 >seq1 Length=147124936 Score = 149 bits (164), Expect = 8e-31 Identities = 415/633 (66%), Gaps = 8/633 (1%) Strand=Plus/Plus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 || || || || || || | || ||||| ||||| ||||| |||| |||||| || | Sbjct 98686984 TTCTGATACTCTCCAACTCTCTTCTCGAAGAAATTGGTTTTCCCTTGCAATGAAATTAGT 98687043 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| ||||||| || || | ||||||| ||||| | | || || | | | Sbjct 98687044 TCCATCCAATCAAAAGGGTTAGCCGCATTGTACATTTTGCCATACCCTAAAGCTCCTAAC 98687103 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGA-- 33468 || | ||| || ||||| || || ||| |||||| |||| |||||| || | | Sbjct 98687104 AACCGATCCGCAACGAACTCAATGTATTGACTCATCAACTCACCATTCATCCCAACTAAC 98687163 Query 33469 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 | || |||||||| | | ||| || || || | ||||||| | | | Sbjct 98687164 GCGCAA--GGAAGAGCGTCGCATACAAACTCCCTCTCTATATACACCGCATCACTCACTA 98687221 Query 33529 TAAATCTAACGGTTTCTTCACTCGG--TGGATGTAATAAATGTTTAAACATCAAACATGC 33586 | | ||| |||||||| | | || || | | || || ||| || || Sbjct 98687222 TTCCCTTCACGCGCTCTTCACTTAGCTTTGACTGAAGGAGAGAGTA--CAGCAAGCAAGC 98687279 Query 33587 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGG 33646 || ||||| || ||||| || |||| | || || ||||| || || || | ||| || Sbjct 98687280 AAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAATCCAGG 98687339 Query 33647 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCC 33706 ||||| || |||||||| | ||||||||| | ||| ||||| || || || || Sbjct 98687340 CATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCGGAGAAAAATATGCC 98687399 Query 33707 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTT 33766 |||||| ||| || || || | | || || || | ||| | | | ||||| || Sbjct 98687400 TTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCCGCCGTCGATCCATTT 98687459 Query 33767 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33826 |||||||||||| || || || || |||| |||||| | || | ||||| Sbjct 98687460 GAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCGTGGAAGAGGCG 98687519 Query 33827 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 33886 ||||||||| | |||||| | |||||| |||| | ||||||||||| || || || Sbjct 98687520 GTTTTTTTCGGTGGCATCTTTGATATAAGTTTCGAGGAGGAGACTATACATCTCAGAGTG 98687579 Query 33887 AATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33919 || || || ||||| || || ||||| || || Sbjct 98687580 GATATTCTCGATGGCGATTTGGAATCCATAAAA 98687612 >seq2 Length=101023042 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| ||||| || | || |||||||| || ||||||||| ||| ||| | | | Sbjct 61425397 AGTTCCAGCATTGAAAAGTGTGGGAGAAGCATGAGTAAACCATCTTTGAGACATCATGTG 61425456 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 || || | ||||| || || || || | ||||||||| ||||| || | |||||| Sbjct 61425457 ATAAGTTTTTATAGCAGAATCAATGTCATTCTTATGAATTCCAACTGCAACCCTCATTAA 61425516 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||| || || ||||| | || || | | ||| || | |||||| | || | Sbjct 61425517 CATGTGTTGGGGCCTTTCTATAACCTTCCCTTGAACTTTTAAGAGGTAGGACCTCTCAAG 61425576 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||| ||||||||||| | || |||||| || || || || || Sbjct 61425577 GGTTTTGAAACCAAAATAATCATAGTCAAAGTCCCGATCATATATGAT 61425624 >seq4 Length=137675496 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 ||| || ||||| || | || |||||||| || || |||||| ||| ||| | | | Sbjct 106876822 AGTGCCAGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCATCTTTGAGACATCATGTG 106876763 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 || || | ||||| || || || || | ||||||||| || || || | |||||| Sbjct 106876762 ATAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATTAA 106876703 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||||||||| ||||| | || || | | |||||| | || || | |||| Sbjct 106876702 CATGTGCTGAGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGATAAGACCTCTCCAG 106876643 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||| || ||||| || | || |||||| || || || || || Sbjct 106876642 GGTTTTGAAGCCAAAGTAATCATAGTCAAAGTCACGATCATATATGAT 106876595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629223847330320