Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2 82.4 7e-11 >seq2 Length=101023042 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 37169 TATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAG 37228 |||| |||||| |||||||||||||| | |||||||||| | | || || || | Sbjct 61423104 TATAGATATTGGAAGTATATGGTTCAAAGCACTCATTATTTCCAAGAATCTGGCTAGTTG 61423163 Query 37229 ATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCT 37288 ||||||| ||||| ||||||| | ||| |||||||| |||||| || || | | Sbjct 61423164 ATGCAGTTGGCATAGGTGCTAACAAAAGTGAATTTCTCACTCCATGCTTAGCTATGTTGT 61423223 Query 37289 TTTTTAGTTCATTCCAATCCCATAAATCTG 37318 | | || ||||||| ||||| | || || Sbjct 61423224 CTCTAAGAGCATTCCAGTCCCACAGATTTG 61423253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468083104101360