Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq9 152 7e-32 seq1 136 6e-27 seq4 96.9 5e-15 seq2 96.9 5e-15 >seq9 Length=96604005 Score = 152 bits (168), Expect = 7e-32 Identities = 562/872 (64%), Gaps = 10/872 (1%) Strand=Plus/Minus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 ||||| || || || || | ||| ||||| ||||| ||||| |||| ||| ||||| | Sbjct 49336681 TTTTGATACTCTCCAACTCTTTTCTCGAAGAAATTGGTTTTCCCTTGCAACGATATCAGT 49336622 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| ||||||| || ||| || || || || ||| | || || | | | Sbjct 49336621 TCCATCCAATCAAATGGGTTGACCACGTTGTACATCTTTCCGTACCCTAACGCTCCCAAC 49336562 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 || | |||||| || || || || || |||| | || | ||||| || | | Sbjct 49336561 AACCGATCCGCTACGAACTCGATGTACTGACTCATTAACTCGCCGTTCATCCCAACCAAC 49336502 Query 49849 TTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 49906 || ||||| |||| || ||| | | | | | ||| ||||| || ||| | Sbjct 49336501 GCGCAGGGCAGAGCATCGCA-TACGAACTCCCTCT-CTATGTCCACCGCGTCCCTTACTA 49336444 Query 49907 TAGATCTAACGGTTTCTTCACTCGG--TGGATGCAATAAATGTTTAAACATCAAACATGC 49964 | ||| ||| |||||||||| | | || | | | || || ||| || || Sbjct 49336443 TCCCTCTCACGCGTTCTTCACTCAGCTTTGACCTGAGGAGAGAGTA--CAGCAAGCAAGC 49336386 Query 49965 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGG 50024 |||||| ||||| ||||| || |||| |||| ||||| || || || | |||||| Sbjct 49336385 GAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAATCCGGG 49336326 Query 50025 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTC 50083 ||||| || | |||||| | ||||||||||| | || || || || || ||||| | Sbjct 49336325 CATTAACCCCCTCTTTTTTAACCAAAATATGG-CACAGAAACTTCCGGAGAAAAAGATCC 49336267 Query 50084 CTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACT 50143 | ||||| ||||| || | | | || | || | | | | | | ||||| | Sbjct 49336266 CCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGTCGATCCATT 49336207 Query 50144 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 50203 | |||||| ||||| || || ||||| |||| ||| || ||||| || ||| Sbjct 49336206 TCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCGCGGAAAAGAC 49336147 Query 50204 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 50263 ||| ||||| | |||||| | ||||| |||| | ||||| ||||| || || | Sbjct 49336146 GGTTCTTTTCGTCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTACATCTCGGAGT 49336087 Query 50264 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 50323 | || ||||| || || || || || || || ||| | ||||||| || || || | Sbjct 49336086 GGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAGATTTGGACCT 49336027 Query 50324 CTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 50383 || | || || |||| | || ||| ||||| || || ||| |||||||| | Sbjct 49336026 CTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCGGCAAAAAAGG 49335967 Query 50384 CCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATAT 50443 | | || || | || || || | |||| | || || | ||| | | | | Sbjct 49335966 CGAGAACGTGACTAATGAAGTGGTGCTCGTCAGCGGTGAGAGCTTCCCAGTGACGAAGAA 49335907 Query 50444 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 50503 | ||| | ||| ||||| || | |||||||| || || || || || || ||||| | Sbjct 49335906 CGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACATTT 49335847 Query 50504 TCCAGATGTCATGATATTGGATTGGGAAAATA 50535 ||| | || | |||||||| ||||| ||| Sbjct 49335846 CCCATACTTCTGGGTATTGGATCGGGAACATA 49335815 >seq1 Length=147124936 Score = 136 bits (150), Expect = 6e-27 Identities = 418/636 (66%), Gaps = 14/636 (2%) Strand=Plus/Plus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 || || || || || || | || ||||| ||||| ||||| |||| |||||| || | Sbjct 98686984 TTCTGATACTCTCCAACTCTCTTCTCGAAGAAATTGGTTTTCCCTTGCAATGAAATTAGT 98687043 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| ||||||| || || | |||| || ||||| | | || || | | | Sbjct 98687044 TCCATCCAATCAAAAGGGTTAGCCGCATTGTACATTTTGCCATACCCTAAAGCTCCTAAC 98687103 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTA-TAA- 49846 || | |||||| || || || || ||| |||||| |||| |||||| || | ||| Sbjct 98687104 AACCGATCCGCAACGAACTCAATGTATTGACTCATCAACTCACCATTCATCCCAACTAAC 98687163 Query 49847 GTTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTAT 49904 | || |||||||| |||| | ||| || || || | |||||||| | | Sbjct 98687164 GCGCAA--GGAAGAGCGTCGCAT--ACAAACTCCCTCTCTATATACACCGCATCACTCAC 98687219 Query 49905 AATAGATCTAACGGTTTCTTCACTCGG--TGGATGCAATAAATGTTTAAACATCAAACAT 49962 || | ||| |||||||| | | || || | | || || ||| || Sbjct 98687220 TATTCCCTTCACGCGCTCTTCACTTAGCTTTGACTGAAGGAGAGAGTA--CAGCAAGCAA 98687277 Query 49963 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 50022 || || ||||| || ||||| || |||| | || | ||||| || || || | ||| Sbjct 98687278 GCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAATCCA 98687337 Query 50023 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGAT 50081 ||||||| || |||||||| | ||||||||| | |||| || || || || || || Sbjct 98687338 GGCATTAACCCGCGCTTTTTTAACCAAAATATCG-CGCAGAAACTGCCGGAGAAAAATAT 98687396 Query 50082 TCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCA 50141 |||||||| || || || | | | || || || ||| | | | ||||| Sbjct 98687397 GCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCCGCCGTCGATCCA 98687456 Query 50142 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 50201 || |||||||||||| || || || || |||| |||||| | || | ||||| Sbjct 98687457 TTTGAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCGTGGAAGAG 98687516 Query 50202 ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 50261 ||||||||| | |||||| | |||||| |||| | ||||||||||| || || Sbjct 98687517 GCGGTTTTTTTCGGTGGCATCTTTGATATAAGTTTCGAGGAGGAGACTATACATCTCAGA 98687576 Query 50262 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 50297 || || || || ||||| || || ||||| || || Sbjct 98687577 GTGGATATTCTCGATGGCGATTTGGAATCCATAAAA 98687612 >seq4 Length=137675496 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 ||| || ||||| || | || |||||||| || || |||||| ||| ||||| | | Sbjct 106876822 AGTGCCAGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCATCTTTGAGACATCATGTG 106876763 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 || || | ||||| || || || || | ||||||||| || || || | |||||| Sbjct 106876762 ATAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATTAA 106876703 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||||||||| ||||| | | ||| | | |||||| | ||||| | |||| Sbjct 106876702 CATGTGCTGAGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGATAAGACCTCTCCAG 106876643 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||||| || ||||| || | || |||||| || || || || || Sbjct 106876642 GGTTTTGAAGCCAAAGTAATCATAGTCAAAGTCACGATCATATATGAT 106876595 Score = 86.0 bits (94), Expect = 9e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | |||| ||| || | ||| | || | || |||||| | ||| || Sbjct 106877165 TCCTCCTTGATCAACATATCGAGCAGTATCATTGAACACCCGCAGCATTGGGACAATTCC 106877106 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||||||||| || || ||||| || || |||| |||||||| || || Sbjct 106877105 ATTAGATGTACCATTTGTTCCACGAATATAACTACCTGTGGCTCGAATATTGTGAACAGA 106877046 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| || || ||| ||| | || || || || || ||||| || Sbjct 106877045 AACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATATAT 106876986 Query 80274 GCCCTCTATGCTATCATCAATCATG 80298 || || || |||||||| ||||| Sbjct 106876985 TCCTTCAATACTATCATCTTTCATG 106876961 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 79077 CAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAA 79136 ||| ||||| ||| | |||||||| ||||||||| || | |||||||||| || | Sbjct 106879145 CAAAACTCTGCGACTATAAATATTGGAGGTATATGGCTCAAAGCATTCATTATTCCCAAG 106879086 Query 79137 AATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATA 79177 ||| ||| |||||| || |||||||||||||| | ||||| Sbjct 106879085 AATCTGACTAGTTGAAGCAGTTGGCATAGGTGCTAACAATA 106879045 >seq2 Length=101023042 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| ||||| || | || |||||||| || ||||||||| ||| ||||| | | Sbjct 61425397 AGTTCCAGCATTGAAAAGTGTGGGAGAAGCATGAGTAAACCATCTTTGAGACATCATGTG 61425456 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 || || | ||||| || || || || | ||||||||| || || || | |||||| Sbjct 61425457 ATAAGTTTTTATAGCAGAATCAATGTCATTCTTATGAATTCCAACTGCAACCCTCATTAA 61425516 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||| || || ||||| | | ||| | | ||| || | ||| || | || | Sbjct 61425517 CATGTGTTGGGGCCTTTCTATAACCTTCCCTTGAACTTTTAAGAGGTAGGACCTCTCAAG 61425576 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||||| ||||||||||| | || |||||| || || || || || Sbjct 61425577 GGTTTTGAAACCAAAATAATCATAGTCAAAGTCCCGATCATATATGAT 61425624 Score = 87.8 bits (96), Expect = 3e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 ||||| ||||| | || | ||| |||| ||| | || | || |||||| | ||| ||| Sbjct 61425054 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACCCGCAGCATTGGGACAATGCCA 61425113 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 || ||||||||||| || || || || || | | || |||||||| || ||| Sbjct 61425114 TTAGATGTACCATTTGTTCCACGAATGTAACTACTTGTAGCCCGAATATTGTGAACTGAG 61425173 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| ||||| || || ||| ||||| || || || || || ||||| || Sbjct 61425174 ACACCAATTCCTCCAGCTGATTTGCTGATTATAGCACACTCCTTCAAAGTGTCATATATT 61425233 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| || |||||||| |||| |||| ||| ||||| Sbjct 61425234 CCCTCGATACTATCATCTTTCATACACAGTAAAAAGCAGCT 61425274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717591661067160