Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq9 129 6e-25 seq1 105 6e-18 >seq9 Length=96604005 Score = 129 bits (142), Expect = 6e-25 Identities = 371/564 (66%), Gaps = 9/564 (2%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || || || |||||||| || || || ||||||| || | |||||||| || ||| Sbjct 49336393 AAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 49336334 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988 ||||| ||||| || || | ||||||||||||||||| ||| || ||||| || Sbjct 49336333 AATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAA 49336274 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048 || || ||||| || |||||| || ||||| ||||| | || | | || | || Sbjct 49336273 AAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCG-TC 49336215 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 | |||||||| ||||||| || | |||||| | | | || || || || || Sbjct 49336214 G--ATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 49336157 Query 14109 TTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14168 || | | | ||| || | | | | ||||| || || | ||| | || ||| Sbjct 49336156 CGGAAAAGACGGTTCTTTTCGTCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 49336097 Query 14169 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCAT-AAAAGCATCTAGCTTCCGA 14227 || || ||||| || ||||| ||||| || || ||||||| ||||||| | || || || Sbjct 49336096 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGCCTCGGA 49336038 Query 14228 CCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14287 ||| || || || | | || | || ||| ||||| ||||| || Sbjct 49336037 GATTTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGC 49335978 Query 14288 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCA 14347 |||||||| || | | || |||| |||| ||||| ||| | |||| || ||| Sbjct 49335977 GGCAAAAAAGGCGAGAACGTGACTAATGAAGTGGTGCTCGTCAGCGGTGAGAGCTTCCCA 49335918 Query 14348 AT--CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCT 14405 | || | || | ||| ||||| ||||| || | |||||||| || | ||| Sbjct 49335917 GTGACGAAGAA--CGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCT 49335860 Query 14406 TTTTTATACATTACCCATATTTCT 14429 || || |||||| |||||| |||| Sbjct 49335859 TTCTTGTACATTTCCCATACTTCT 49335836 >seq1 Length=147124936 Score = 105 bits (116), Expect = 6e-18 Identities = 124/166 (75%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || || ||||| || ||||| || || ||||||| | || | |||||||| || ||| Sbjct 98687272 AAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTT 98687331 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATAT--TGCAGCAAATGACCCGGAAA 13986 ||||| ||||| || || || ||||||||||||||||| |||| || || ||||| | Sbjct 98687332 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTG--CCGGAGA 98687389 Query 13987 AGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA 14032 | ||||| || || || ||| || || ||||| ||||| |||| Sbjct 98687390 AAAATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAA 98687435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479275742424600