Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq10 104 2e-17 seq11 95.1 9e-15 seq7 93.3 3e-14 seq12 84.2 2e-11 >seq10 Length=114683840 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||||| | |||||| || | || ||| || || | ||| ||||| | Sbjct 38466906 CCACCACGCAGTCGGAGCACCAAGTGAAGGGTAGACTCTTTCTGGATATTATAATCTGCA 38466847 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | || || | |||||||| ||||||||||| | ||| ||||| | || Sbjct 38466846 AGTGTCCTACCATCTTCGAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGATCTGGTGGA 38466787 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| |||| || || ||| ||||| | ||| || Sbjct 38466786 ATCCCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTGTCAGAACTCTCAACT 38466727 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| |||||||| ||||| ||||||||||||||||| Sbjct 38466726 TCCAAAGTAATAGTCTTTCCGGTGAGAGTCTTCACAAAAATTTGCAT 38466680 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||||| | |||||| || | || ||| || || | ||| ||||| | Sbjct 38472618 CCACCACGCAGTCGGAGCACCAAGTGAAGGGTAGACTCTTTCTGGATATTATAATCTGCA 38472559 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | || || | |||||||| ||||||||||| | ||| ||||| | || Sbjct 38472558 AGTGTCCTACCATCTTCGAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGATCTGGTGGA 38472499 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| |||| || || ||| ||||| | ||| || Sbjct 38472498 ATCCCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTGTCAGAACTCTCAACT 38472439 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| |||||||| ||||| ||||||||||||||||| Sbjct 38472438 TCCAAAGTAATAGTCTTTCCGGTGAGAGTCTTCACAAAAATTTGCAT 38472392 Score = 95.1 bits (104), Expect = 9e-15 Identities = 144/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 42912 AGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCC 42971 |||| ||||||||| | ||||||||| | ||| || | | |||| |||| |||||| || Sbjct 64670801 AGTGGACTCCTTTTGAATATTGTAATCAGCCAAAGTCCTTCCGTCTTCCAGTTGTTTCCC 64670860 Query 42972 GGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTT 43030 ||||||||||| | || ||||| | || | |||||||| || ||| ||| | ||| Sbjct 64670861 AGCAAAAATCAACCTTTGCTGATCTGGTGGAATTCCTTCTTTGTC-CTGAATCTTCGCTT 64670919 Query 43031 TGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGA 43089 | || | ||| || || | ||| ||| || |||| || || || || ||||| | | Sbjct 64670920 TCACGTTATCAATCGTATC-CGAGCTCTCCACTTCTAAAGTAATCGTCTTACCGGTCAAA 64670978 Query 43090 GTTTTCACAAAAATTTGCAT 43109 || || || || || ||||| Sbjct 64670979 GTCTTGACGAAGATCTGCAT 64670998 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| |||| |||||||||||||| || ||||| || | || ||||| | Sbjct 38466679 GCCACCACGGAGTCGTAACACCAAATGGAGGGTCGATTCCTTCTGAATGTTATAATCAGC 38466620 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || | || || | || || || ||||||||||| | ||| || || | || Sbjct 38466619 AAGAGTTCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCCGGTGG 38466560 Query 43002 CACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | ||||| || || ||| ||| | || || | ||| || || | ||| | Sbjct 38466559 GATCCCTTCCTTATC-CTGAATCTTGGCCTTAACATTATCAATCGTATCAGAACTCTCCA 38466501 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | ||| ||||||||||| || || ||||| |||||||| ||||| Sbjct 38466500 CCTCCAACGTAATAGTTTTTCCAGTGAGGGTTTTTACAAAAATCTGCAT 38466452 >seq11 Length=105699404 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || || || || | || | ||| |||||||| | ||| ||||| | | Sbjct 76982802 CCTCCACGAAGCCTCAAAACAAGGTGAAGGGTGGATTCCTTTTGGATATTATAATCAGCC 76982743 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | || |||||||||||||| || || ||||| |||||||| || | || Sbjct 76982742 AAGGTCCTCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGCTGTTGGTCAGGTGGG 76982683 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| | || || || | | |||||| | |||||| Sbjct 76982682 ATTCCTTCCTTGTCTTGAATCTTGGCCTTAACGTTGTCGATGGTGTCGGAACTCTCGACT 76982623 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || ||||||| ||||| ||||| |||||||| Sbjct 76982622 TCGAGGGTGATGGTCTTGCCGGTTAAGGTTTTGACAAAGATTTGCAT 76982576 >seq7 Length=127721098 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||||| ||| |||||| || | ||| ||||||| Sbjct 86220386 CCACCACGAAGGCGGAGAACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCA 86220327 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | | || || | |||||| || ||||||||||||| ||||| || | || Sbjct 86220326 AGAGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGG 86220267 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || ||| ||| |||| || | ||| || || | ||| || Sbjct 86220266 ATTCCTTCTTTGTC-CTGAATCTTGGCTTTCACATTATCAATGGTATCCGAACTCTCCAC 86220208 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || ||||| || |||||||| ||||| |||||||| Sbjct 86220207 CTCCAAGGTAATTGTCTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 86220160 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | ||||||||||| ||| |||||||| | |||||||| | | Sbjct 44543283 CCTCCACGAAGGCGGAGCACCAAATGGAGGGTGGAATCCTTTTGGATGTTGTAATCAGCC 44543342 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || || | ||| || |||||||| || | | ||| || || | || Sbjct 44543343 AGGGTACGACCATCTTCTAGTTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCTGGAGGG 44543402 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | |||| ||| || |||| | ||||| | ||| ||||| | ||| || || Sbjct 44543403 ATCCCTTATTTGTCTTGGATCTTGGCCTTGACATTATCAATGGTGTC-CGAGCTTTCCAC 44543461 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| || ||||| || || || ||||| |||||||| Sbjct 44543462 CTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTAACAAAGATTTGCAT 44543509 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 || |||||||| | || ||||||||| | || || || | | || | |||| Sbjct 44509287 AAAACCAAATGCAGGGTCGACTCCTTTTGAATGTTATAGTCCGCAAGGGTCCTCCCGTCC 44509346 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 || | || || |||||||||||||| | |||||| || | || | ||| || || || Sbjct 44509347 TCGAGCTGCTTTCCGGCAAAAATCAACCTCTGTTGGTCAGGTGGGATACCCTCCTTATCT 44509406 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGT 43076 |||| | || || | |||| |||||| ||| ||| || || | ||| || || Sbjct 44509407 TGGATCTTGGCCTTAACATTATCAACCGTGTCG-GAGCTCTCCACCTCCAACGTAATGGT 44509465 Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 ||| ||||| | |||||||||||| || |||||| Sbjct 44509466 TTTACCGGTCAAAGTTTTCACAAATATCTGCATT 44509499 >seq12 Length=146008498 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || || | |||| |||| ||||| || | ||||||||| | | Sbjct 12766459 CCACCACGAAGACGCAAGACAAGGTGGAGAGTGGATTCCTTCTGAATATTGTAATCAGCC 12766518 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | | || ||||||||||| || || |||||||| | || ||||| | || Sbjct 12766519 AAAGTCCTTCCATCTTCCAATTGTTTCCCAGCGAAAATCAACCTTTGCTGATCTGGTGGA 12766578 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || ||| ||| | | || || || | | || ||| | ||| || Sbjct 12766579 ATTCCTTCTTTGTC-CTGAATCTTCGCCTTAACATTGTCGATCGTATCGGAACTCTCCAC 12766637 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||||| ||||| || || | || || || ||||| ||||| Sbjct 12766638 CTCCAAAGTTATGGTTTTCCCAGTCAACGTCTTGACGAAAATCTGCAT 12766685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381019056862302