Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq9 145 1e-29 seq1 132 6e-26 seq2 93.3 6e-14 seq4 91.5 2e-13 >seq9 Length=96604005 Score = 145 bits (160), Expect = 1e-29 Identities = 387/587 (66%), Gaps = 6/587 (1%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| ||| || |||||||| ||||| ||||| ||||||| ||||| ||||| || | Sbjct 49336398 ACAGCAAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGA 49336339 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | || | ||||||||||| || | |||||| | ||||||||| | | || || ||| Sbjct 49336338 AAGTTAATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATAT-GGCACAGAAACTTCCG 49336280 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 42235 || || ||||| || ||||| ||||| || || | | || | || | | | Sbjct 49336279 GAGAAAAAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCG 49336220 Query 42236 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295 | | ||||| || |||||| ||||| || || ||||| |||| ||| || ||| Sbjct 49336219 CCGTCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATG 49336160 Query 42296 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA 42355 || || ||| ||| ||||| | |||||| | || || |||| | ||||| Sbjct 49336159 GCGCGGAAAAGACGGTTCTTTTCGTCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTG 49336100 Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415 ||||| || || || || ||||| || || || || || || || ||| | |||||| Sbjct 49336099 TACATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCG 49336040 Query 42416 GTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG 42475 | | || || ||| | || || |||| | || || ||||| || || | Sbjct 49336039 GAGATTTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAG 49335980 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--CGGTGTTAATTTAT 42533 || |||||||| || | || || | || || | | ||||| ||||| | | | Sbjct 49335979 GCGGCAAAAAAGGCGAGAACGTGACTAATGAAGTGGTGCTCGTCAGCGGTGAGAGCT--T 49335922 Query 42534 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTG 42593 ||| | | | | | ||| | ||| ||||| ||| | |||||||| || ||||| | Sbjct 49335921 CCCAGTGACGAAGAACGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGG 49335862 Query 42594 CCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATA 42640 | || || ||||| | ||| | || | ||||| || ||||| ||| Sbjct 49335861 CTTTCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGGAACATA 49335815 >seq1 Length=147124936 Score = 132 bits (146), Expect = 6e-26 Identities = 239/347 (69%), Gaps = 2/347 (1%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| ||| || || || ||||| || ||||| ||||||| | || || ||||| || | Sbjct 98687267 ACAGCAAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGA 98687326 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCA 42175 | || | ||| ||||||| || |||||||| | ||||||||| | |||| | | || Sbjct 98687327 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCG-CGCAGAAACTGCCG 98687385 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 42235 || || || || |||||||| || || || || | | || || || | | | | Sbjct 98687386 GAGAAAAATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCCG 98687445 Query 42236 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295 | | ||||| || |||||||||||| || || || || |||| |||||| | Sbjct 98687446 CCGTCGATCCATTTGAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTA 98687505 Query 42296 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA 42355 || | ||||| ||||||||| | |||||| | ||| || |||| | |||||| Sbjct 98687506 GCGTGGAAGAGGCGGTTTTTTTCGGTGGCATCTTTGATATAAGTTTCGAGGAGGAGACTA 98687565 Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 42402 ||||| || || || || || || ||||| || || ||||| || || Sbjct 98687566 TACATCTCAGAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAA 98687612 >seq2 Length=101023042 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 ||||| ||||| | || | ||| |||| ||| | || | || |||||| | ||| ||| Sbjct 61425054 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACCCGCAGCATTGGGACAATGCCA 61425113 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || |||| |||||| || || || || || | | || ||||||||| || ||| Sbjct 61425114 TTAGATGTACCATTTGTTCCACGAATGTAACTACTTGTAGCCCGAATATTGTGAACTGAG 61425173 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| ||||| || || ||| ||||| || || || || || ||||| || Sbjct 61425174 ACACCAATTCCTCCAGCTGATTTGCTGATTATAGCACACTCCTTCAAAGTGTCATATATT 61425233 Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 ||||| ||||||||||| |||| |||| ||| ||||| Sbjct 61425234 CCCTCGATACTATCATCTTTCATACACAGTAAAAAGCAGCT 61425274 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||| ||||| || | || |||||||| || ||||||||| ||| ||||| | | Sbjct 61425397 AGTTCCAGCATTGAAAAGTGTGGGAGAAGCATGAGTAAACCATCTTTGAGACATCATGTG 61425456 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 || || | ||||| || || || || | ||| ||||| || || || | |||||| Sbjct 61425457 ATAAGTTTTTATAGCAGAATCAATGTCATTCTTATGAATTCCAACTGCAACCCTCATTAA 61425516 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| || || || ||||| | | ||| | | ||| || | |||||| | || | Sbjct 61425517 CATGTGTTGGGGCCTTTCTATAACCTTCCCTTGAACTTTTAAGAGGTAGGACCTCTCAAG 61425576 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||| ||||||||||| | || |||||| || || || || || Sbjct 61425577 GGTTTTGAAACCAAAATAATCATAGTCAAAGTCCCGATCATATATGAT 61425624 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 71164 ACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATT 71223 ||||||||| | || ||||| ||||| ||||| | ||||||||||||| | ||| Sbjct 61423094 ACTCTACGACTATAGATATTGGAAGTATATGGTTCAAAGCACTCATTATTTCCAAGAATC 61423153 Query 71224 TGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATG-TGA 71282 || |||||||||||| ||||||||||| | ||| || |||||| | ||||| | | Sbjct 61423154 TGGCTAGTTGATGCAGTTGGCATAGGTGCTAACAAAAGTGAATTTCTCACTCCATGCTTA 61423213 Query 71283 TCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGAT 71320 | || || ||| | |||| | ||| | ||| |||| Sbjct 61423214 GC-TATGTTGTCTCTAAGAGCATTCCAGTCCCACAGAT 61423250 >seq4 Length=137675496 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| ||||| | |||| ||| || | ||| | || | || |||||| | ||| || Sbjct 106877165 TCCTCCTTGATCAACATATCGAGCAGTATCATTGAACACCCGCAGCATTGGGACAATTCC 106877106 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| |||| |||||| || || ||||| || || |||| ||||||||| || || Sbjct 106877105 ATTAGATGTACCATTTGTTCCACGAATATAACTACCTGTGGCTCGAATATTGTGAACAGA 106877046 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| ||||| || || ||| ||| | || || || || || ||||| || Sbjct 106877045 AACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATATAT 106876986 Query 72357 GCCCTCTATACTATCATCCATCATG 72381 || || ||||||||||| ||||| Sbjct 106876985 TCCTTCAATACTATCATCTTTCATG 106876961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670506491908440