Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq10 113 5e-20 seq12 105 7e-18 seq11 86.0 6e-12 seq7 82.4 8e-11 >seq10 Length=114683840 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| | |||| || || || ||||| || |||||||| | Sbjct 64670772 CCACCACGAAGACGAAGAACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAATCAGCC 64670831 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| |||||||| |||||| | |||| | ||||||||| || || Sbjct 64670832 AAAGTCCTTCCGTCTTCCAGTTGTTTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGA 64670891 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| || ||| | | || | ||| |||| | || ||| Sbjct 64670892 ATTCCTTCTTTGTCCTGAATCTTCGCTTTCACGTTATCAATCGTATCCGAGCTCTCCACT 64670951 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||| |||||||| || || ||||| || ||||| Sbjct 64670952 TCTAAAGTAATCGTCTTACCGGTCAAAGTCTTGACGAAGATCTGCAT 64670998 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||||| || | ||||| || ||||| || || || ||||||||| Sbjct 64671000 CCACCTCGAAGACGCAGGACCAGATGAAGAGTCGATTCCTTCTGGATATTGTAATCGGCT 64671059 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | | ||| |||||||| || || || |||| ||||||||||| || || || Sbjct 64671060 AAAGTCCGCCCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGG 64671119 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| ||||| ||| | | || | |||||| | | || || Sbjct 64671120 ATGCCTTCCTTGTCTTGGATTTTGGCTTTCACGTTGTCGATCGTGTCAGAGCTCTCGACC 64671179 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||| ||||| | || || ||||| |||||||| Sbjct 64671180 TCGAGAGTGATCGTCTTTCCGGTAAGCGTCTTAACGAAGATTTGCAT 64671226 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| || || | ||||||||||||||| || Sbjct 64671258 GTTGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCCGTCTTCGAGTTGTTTTCCG 64671317 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||||||||| || || || |||||||| ||||| || || || Sbjct 64671318 GCGAAGATGAGACGTTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTA 64671377 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| | | || || || | ||| | |||||||||||||| ||| Sbjct 64671378 ACGTTGTCGATCGTGTCGGAGCTCTCGACCTCGAGAGTGATTGTCTTGCCGGTCAAGGTT 64671437 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| |||||||| Sbjct 64671438 TTCACGAAGATTTGCAT 64671454 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || ||||| |||||||||||| || || | ||| || || ||||| || Sbjct 64671486 GTTGACTCCTTTTGGATGTTGTAATCGGCCAAGGTCCGGCCGTCCTCAAGCTGTTTTCCG 64671545 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||||||||| ||||| || ||||| |||||||| || || ||||| || Sbjct 64671546 GCGAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCTTGGATTTTGGCCTTC 64671605 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| | | || || || | ||| | |||||||||||| | || Sbjct 64671606 ACGTTGTCGATCGTGTCGGAGCTCTCGACCTCGAGAGTGATCGTCTTGCCGGTTAGAGTC 64671665 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 64671666 TTAACGAAGATCTGCAT 64671682 >seq12 Length=146008498 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || ||||| | || || || || || |||||||||||| || |||| ||| Sbjct 12766701 CAATACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGACCGTC 12766760 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||||||||||| || ||| | || || | |||||| || || || |||||||| ||||| Sbjct 12766761 CTCGAGTTGTTTCCCGGCAAATATGAGCCTTTGCTGGTCTGGTGGGATGCCTTCCTTGTC 12766820 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 || ||| || | | || | ||||| | | ||| ||||| | ||| | || Sbjct 12766821 TTGGATCTTTGCCTTGACGTTGTCAATGGTGTCAGAGCTTTCGACTTCCAAAGTTATGGT 12766880 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||||||| ||||| ||||| || ||||| Sbjct 12766881 CTTGCCGGTCAGGGTTTTGACGAAGATCTGCAT 12766913 Score = 105 bits (116), Expect = 7e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || |||||||||||| || || | ||||||||| ||||| || Sbjct 24218956 GTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTCTTCGAGCTGTTTGCCG 24218897 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| ||||| || || || |||||||| ||||| |||||| ||| Sbjct 24218896 GCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTT 24218837 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || ||||| | || | ||||||||||| || ||| Sbjct 24218836 ACATTATCGATGGTGTCAGAGCTCTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAGGTT 24218777 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 24218776 TTGACGAAGATCTGCATA 24218759 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || |||||||||||| || || | |||||||| ||||| || Sbjct 24218728 GTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCATCTTCGAGCTGTTTTCCG 24218669 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| ||||| || || || |||||||| ||||| ||||| || Sbjct 24218668 GCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATTTTAGACTTC 24218609 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || ||||| | || | ||||||||||| || ||| Sbjct 24218608 ACATTATCGATGGTGTCGGAGCTCTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAGGTT 24218549 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 24218548 TTGACGAAGATCTGCATA 24218531 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || |||||||||||| || || | ||| ||||| ||||| || Sbjct 24218500 GTGGATTCCTTCTGAATGTTGTAATCGGCCAAGGTACGGCCGTCCTCGAGCTGTTTGCCG 24218441 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| ||||| || || || |||||||| ||||| |||||| ||| Sbjct 24218440 GCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTT 24218381 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | || || || | || | ||||||||||| | ||| Sbjct 24218380 ACATTATCGATGGTGTCAGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTAAGGGTT 24218321 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 24218320 TTGACGAAGATCTGCAT 24218304 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || |||| ||| | || | ||| | || || || || || |||||||||||| Sbjct 12766914 GCCACCACGTAGACGGAGGACGAGATGTAGGGTGGACTCCTTCTGGATGTTGTAATCGGC 12766973 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | |||||||| ||||| || || |||| |||||||| || || || || Sbjct 12766974 CAAGGTCCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGG 12767033 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||||| || | | || | |||||| | || || Sbjct 12767034 GATCCCTTCCTTGTCTTGGATTTTCGCCTTAACGTTGTCGATCGTGTCGGAACTCTCGAC 12767093 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | ||||||||||||| || || ||||| || ||||| Sbjct 12767094 TTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTAACGAAGATCTGCAT 12767141 >seq11 Length=105699404 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | | |||||| | |||| || ||||| ||||| || || ||||| | Sbjct 76982802 CCTCCACGAAGCCTCAAAACAAGGTGAAGGGTGGATTCCTTTTGGATATTATAATCAGCC 76982743 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || ||| ||||| | |||||| ||||| |||||| ||| || || || || || Sbjct 76982742 AAGGTCCTCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGCTGTTGGTCAGGTGGG 76982683 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || || | | || | ||||| | || ||| Sbjct 76982682 ATTCCTTCCTTGTCTTGAATCTTGGCCTTAACGTTGTCGATGGTGTCGGAACTCTCGACT 76982623 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||||||||| || ||||| || || |||||||| Sbjct 76982622 TCGAGGGTGATGGTCTTGCCGGTTAAGGTTTTGACAAAGATTTGCAT 76982576 >seq7 Length=127721098 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | || | || ||||| | || || || ||||| ||||||||||| | Sbjct 44543283 CCTCCACGAAGGCGGAGCACCAAATGGAGGGTGGAATCCTTTTGGATGTTGTAATCAGCC 44543342 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| ||||| ||||| ||| |||| || | ||||| || ||||| Sbjct 44543343 AGGGTACGACCATCTTCTAGTTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCTGGAGGG 44543402 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||| |||||| || || || | | || | ||||||| | ||| || Sbjct 44543403 ATCCCTTATTTGTCTTGGATCTTGGCCTTGACATTATCAATGGTGTCCGAGCTTTCCACC 44543462 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | ||||||||||| | || || || || ||||||||| Sbjct 44543463 TCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTAACAAAGATTTGCATA 44543510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506536418512080