Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq10 98.7 8e-16 seq7 95.1 1e-14 >seq10 Length=114683840 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||||||||||||||||||||| |||| || | |||| ||||| ||||| || Sbjct 64670802 GTGGACTCCTTTTGAATATTGTAATCAGCCAAAGTCCTTCCGTCTTCCAGTTGTTTCCCA 64670861 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| | || |||||||| || | || |||||||| ||| ||| ||| Sbjct 64670862 GCAAAAATCAACCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTCGCTTTC 64670921 Query 18965 ACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | | | ||||| | || |||| ||| | ||||| || ||||| || ||||| Sbjct 64670922 ACGTTATCAATCGTATC-CGAGCTCTCCACTTCTAAAGTAATCGTCTTACCGGTCAAAGT 64670980 Query 19024 TTTGACAAAAATTTGCAT 19041 ||||| || || ||||| Sbjct 64670981 CTTGACGAAGATCTGCAT 64670998 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || |||| | | ||||| ||||| || ||||||||||| || || ||||||| Sbjct 38460224 TTCCACCACGCAGTCGCAGCACCAAGTGCAGGGTTGACTCCTTTTGGATGTTATAATCCG 38460165 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | ||||| ||||| || || ||| |||| | ||||||||||| | Sbjct 38460164 CAAGCGTCCTCCCATCCTCGAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGATCTGGTG 38460105 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| ||||| ||| ||| || || | | | ||||| | |||| Sbjct 38460104 GAATACCCTCCTTGTCCTGAATCTTCGCCTTAACATTATCAATGGTATCAGAACTCTCCA 38460045 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || |||||||| || || | ||||| ||||| || ||||| Sbjct 38460044 CCTCCAAAGTGATGGTTTTTCCGGTGAGGGTTTTTACAAATATCTGCAT 38459996 >seq7 Length=127721098 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 |||| ||||||||||| || |||||||| || || | ||| ||||||||| ||| Sbjct 44509068 TGCAGAGTAGACTCCTTCTGGATATTGTAGTCAGCTAGGGTTCGACCGTCCTCCAACTGC 44509127 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| | || | |||||||||||| ||| | ||||| ||||| ||| || Sbjct 44509128 TTCCCAGCAAAGATCAACCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGAATCTTT 44509187 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 |||||| | | | | ||||| | || ||| || | ||| |||||||| || || Sbjct 44509188 GCTTTTACATTGTCAATCGTATC-CGAGCTCTCAACCTCCAGGGTGATGGTTTTCCCAGT 44509246 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 || || |||||||| || ||||| Sbjct 44509247 CAAGGTCTTGACAAATATCTGCAT 44509270 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || |||| | | ||||| ||| | || ||||| || |||||||| ||||| | Sbjct 44509498 TTCCACCACGCAGGCGAAGCACCAAGTGGAGGGTTGACTCTTTCTGAATATTATAATCAG 44509557 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | ||||||||||| || || ||| |||| || ||||| |||||| | Sbjct 44509558 CAAGGGTCCTCCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGTTGATCCGGTG 44509617 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || || ||||| || || ||| || | | | | ||||| | ||| Sbjct 44509618 GAATACCTTCCTTGTCCTGGATCTTAGCTTTCACATTGTCAATCGTATCAGAACTCTCAA 44509677 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | |||||| || || ||||| | || || ||||||| |||||| Sbjct 44509678 CTTCCAAGGTAATAGTCTTTCCTGTGAGGGTCTTCACAAAAACTTGCAT 44509726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414191737508086