Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28]
75,419 sequences; 1,694,597,732 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq7 98.7 7e-16
seq2 98.7 7e-16
seq10 91.5 1e-13
seq11 84.2 2e-11
>seq7
Length=127721098
Score = 98.7 bits (108), Expect = 7e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954
|||||||| | | || |||||||| || || ||| |||||||| ||||| ||
Sbjct 44509272 CCTCCTCTAAGGCGCAAAACCAAATGCAGGGTCGACTCCTTTTGAATGTTATAGTCCGCA 44509331
Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014
| | | | || || | || ||||| ||||| ||||||| || ||||| | ||
Sbjct 44509332 AGGGTCCTCCCGTCCTCGAGCTGCTTTCCGGCAAAAATCAACCTCTGTTGGTCAGGTGGG 44509391
Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074
| ||| || |||||| || || || || || |||| || || | ||||||
Sbjct 44509392 ATACCCTCCTTATCTTGGATCTTGGCCTTAACATTATCAACCGTGTCGGAGCTCTCCACC 44509451
Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| | |||||| ||||||||||| ||||| ||||||||||| |||||
Sbjct 44509452 TCCAACGTAATGGTTTTACCGGTCAAAGTTTTCACAAATATCTGCAT 44509498
Score = 95.1 bits (104), Expect = 9e-15
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT-CATCGTC 43971
|||||||| || || ||| || || |||||||||||| || | | | |||| ||
Sbjct 86220368 ACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCG-GCAAGAGTCCTTCCATCTTC 86220310
Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031
| ||||||||| ||||| ||||| | ||| ||||| | || | |||||||| ||
Sbjct 86220309 AAGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCCTG 86220250
Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091
||| || ||| || || ||| ||||| | |||||| || | |||||||| ||
Sbjct 86220249 AATCTTGGCTTTCACATTATCAATGGTATCCGAACTCTCCACCTCCAAGGTAATTGTCTT 86220190
Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCATG 44122
|| || | ||| || ||||| |||||||||
Sbjct 86220189 TCCAGTGAGAGTTTTGACAAAGATTTGCATG 86220159
Score = 82.4 bits (90), Expect = 5e-11
Identities = 113/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024
|||| |||||||||||||| ||||| || | || || ||||| |||| | ||||||||
Sbjct 44510026 CATCCTCCAATTGTTTTCCAGCAAAGATAAGCCTCTGTTGGTCAGGAGGGATACCTTCTT 44510085
Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084
| ||| || || ||||| || ||| || || | ||||| || | || |
Sbjct 44510086 TGTCTTGGATCTTGGCCTTGACATTATCAATTGTGTCGGAGCTTTCCACTTCAAGGGTGA 44510145
Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122
|||| || || || | ||| || |||||||||||||||
Sbjct 44510146 TTGTCTTGCCAGTAAGAGTTTTGACAAATATTTGCATG 44510183
>seq2
Length=101023042
Score = 98.7 bits (108), Expect = 7e-16
Identities = 156/221 (71%), Gaps = 12/221 (5%)
Strand=Plus/Minus
Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTC-ATCGTC 43971
|||||||| || || ||||||||||||||||||||| || | | || ||| ||
Sbjct 44353987 ACCAAATGAAGAGTTGACTCTTTTTGAATATTATAATCAGC-AAGAGTCCTTCCATCCTC 44353929
Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGT-----CCTGAGGT-----ACACCTT 44021
| ||||| ||||||||| || || | || ||||| || | || | ||| |
Sbjct 44353928 AAGTTGTTCTCCTGCAAAAATTAATCTTTACTGGTTTGGGCCGGGGGGGGGGGATACCCT 44353869
Query 44022 CTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCG 44081
|||| || |||||| | ||| || ||| ||| ||||| || ||| || || | |
Sbjct 44353868 CTTTTTCCTGAATTTTGTCTTTCACAATATCAATAGTATTTGAACTCTCAACTTCCAATG 44353809
Query 44082 TAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122
|||||||||| || || | ||||| |||||||||||||||
Sbjct 44353808 TAATTGTTTTTCCAGTGAGGGTCTTGACAAATATTTGCATG 44353768
>seq10
Length=114683840
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGT 43978
|| || ||| ||| ||||||||||| ||||| || | | || |||| ||||
Sbjct 64670796 TGAAGAGTGGACTCCTTTTGAATATTGTAATCAGCCAAAGTCCTTCCGTCTTCCAGTTGT 64670855
Query 43979 TTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTT 44038
|| || ||||| ||||||| |||||| || | || | |||||||| || ||| ||
Sbjct 64670856 TTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTC 64670915
Query 44039 TGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTT 44098
||| || || ||| ||||| | |||||| || | ||||| || ||||||||
Sbjct 64670916 GCTTTCACGTTATCAATCGTATCCGAGCTCTCCACTTCTAAAGTAATCGTCTTACCGGTC 64670975
Query 44099 AAAGTCTTCACAAATATTTGCAT 44121
|||||||| || || || |||||
Sbjct 64670976 AAAGTCTTGACGAAGATCTGCAT 64670998
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 43906 TCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTC 43965
|| |||||||||||| || || || || ||||| |||||||| | || |
Sbjct 38466667 TCGTAACACCAAATGGAGGGTCGATTCCTTCTGAATGTTATAATCAGCAAGAGTTCGGCC 38466608
Query 43966 ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTT 44025
||| || | || ||||| ||||| ||||||| ||||||||| | || | ||||| ||
Sbjct 38466607 ATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCCGGTGGGATCCCTTCCTT 38466548
Query 44026 ATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAAT 44085
||| ||| || || || || ||| ||||| | |||||| || | ||||||
Sbjct 38466547 ATCCTGAATCTTGGCCTTAACATTATCAATCGTATCAGAACTCTCCACCTCCAACGTAAT 38466488
Query 44086 TGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
||||| || || | || || ||||| || |||||
Sbjct 38466487 AGTTTTTCCAGTGAGGGTTTTTACAAAAATCTGCAT 38466452
Score = 82.4 bits (90), Expect = 5e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968
|||||||||||| || || || || ||||| ||||| || | || ||||
Sbjct 38472376 TAACACCAAATGGAGGGTCGATTCCTTCTGAATGTTATAGTCCGCAAGAGTTCGGCCATC 38472317
Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028
|| | || ||||| ||||| ||||||| ||||||||| | || | ||||| |||||
Sbjct 38472316 TTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCCAGTGGGATCCCTTCCTTATC 38472257
Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088
||| || || || || ||| ||||| | |||||| || | |||||| ||
Sbjct 38472256 CTGAATCTTGGCCTTAACATTATCAATCGTATCAGAACTCTCCACCTCCAACGTAATAGT 38472197
Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
||| ||||| | || || ||||| || |||||
Sbjct 38472196 TTTTCCGGTGAGGGTTTTTACAAAAATCTGCAT 38472164
>seq11
Length=105699404
Score = 84.2 bits (92), Expect = 2e-11
Identities = 137/194 (71%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989
|||||| ||||| |||||||| || | | |||| ||||||||||| || |||||
Sbjct 76982995 CTCTTTCTGAATGTTATAATCAGCCAAAGTCCTCCCATCTTCCAATTGTTTGCCGGCAAA 76982936
Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTAT-CTGAAATTTTTTGTTTGACCA 44048
|| | || |||||| || | || | ||||| |||| ||||| | |||| | | ||
Sbjct 76982935 GATGAGCCTTTGCTGATCAGGTGGGATTCCTTCCTTATCCTGAA--TCTTTGCCTTAACA 76982878
Query 44049 TAG-CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTC 44107
| | ||| ||||| | || || || | || |||||||| || || ||||||||
Sbjct 76982877 TTGTCAATGGTATCGGAGCTTTCAACCTCCAAGGTGATTGTTTTGCCTGTCAAAGTCTTG 76982818
Query 44108 ACAAATATTTGCAT 44121
||||| || |||||
Sbjct 76982817 ACAAAAATCTGCAT 76982804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354451499406012
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |