Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq7 98.7 7e-16 seq2 98.7 7e-16 seq10 91.5 1e-13 seq11 84.2 2e-11 >seq7 Length=127721098 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| | | || |||||||| || || ||| |||||||| ||||| || Sbjct 44509272 CCTCCTCTAAGGCGCAAAACCAAATGCAGGGTCGACTCCTTTTGAATGTTATAGTCCGCA 44509331 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | | || || | || ||||| ||||| ||||||| || ||||| | || Sbjct 44509332 AGGGTCCTCCCGTCCTCGAGCTGCTTTCCGGCAAAAATCAACCTCTGTTGGTCAGGTGGG 44509391 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||| || |||||| || || || || || |||| || || | |||||| Sbjct 44509392 ATACCCTCCTTATCTTGGATCTTGGCCTTAACATTATCAACCGTGTCGGAGCTCTCCACC 44509451 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | |||||| ||||||||||| ||||| ||||||||||| ||||| Sbjct 44509452 TCCAACGTAATGGTTTTACCGGTCAAAGTTTTCACAAATATCTGCAT 44509498 Score = 95.1 bits (104), Expect = 9e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT-CATCGTC 43971 |||||||| || || ||| || || |||||||||||| || | | | |||| || Sbjct 86220368 ACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCG-GCAAGAGTCCTTCCATCTTC 86220310 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | ||||||||| ||||| ||||| | ||| ||||| | || | |||||||| || Sbjct 86220309 AAGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCCTG 86220250 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||| || ||| || || ||| ||||| | |||||| || | |||||||| || Sbjct 86220249 AATCTTGGCTTTCACATTATCAATGGTATCCGAACTCTCCACCTCCAAGGTAATTGTCTT 86220190 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || | ||| || ||||| ||||||||| Sbjct 86220189 TCCAGTGAGAGTTTTGACAAAGATTTGCATG 86220159 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| |||||||||||||| ||||| || | || || ||||| |||| | |||||||| Sbjct 44510026 CATCCTCCAATTGTTTTCCAGCAAAGATAAGCCTCTGTTGGTCAGGAGGGATACCTTCTT 44510085 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| || || ||||| || ||| || || | ||||| || | || | Sbjct 44510086 TGTCTTGGATCTTGGCCTTGACATTATCAATTGTGTCGGAGCTTTCCACTTCAAGGGTGA 44510145 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 |||| || || || | ||| || ||||||||||||||| Sbjct 44510146 TTGTCTTGCCAGTAAGAGTTTTGACAAATATTTGCATG 44510183 >seq2 Length=101023042 Score = 98.7 bits (108), Expect = 7e-16 Identities = 156/221 (71%), Gaps = 12/221 (5%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTC-ATCGTC 43971 |||||||| || || ||||||||||||||||||||| || | | || ||| || Sbjct 44353987 ACCAAATGAAGAGTTGACTCTTTTTGAATATTATAATCAGC-AAGAGTCCTTCCATCCTC 44353929 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGT-----CCTGAGGT-----ACACCTT 44021 | ||||| ||||||||| || || | || ||||| || | || | ||| | Sbjct 44353928 AAGTTGTTCTCCTGCAAAAATTAATCTTTACTGGTTTGGGCCGGGGGGGGGGGATACCCT 44353869 Query 44022 CTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCG 44081 |||| || |||||| | ||| || ||| ||| ||||| || ||| || || | | Sbjct 44353868 CTTTTTCCTGAATTTTGTCTTTCACAATATCAATAGTATTTGAACTCTCAACTTCCAATG 44353809 Query 44082 TAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 |||||||||| || || | ||||| ||||||||||||||| Sbjct 44353808 TAATTGTTTTTCCAGTGAGGGTCTTGACAAATATTTGCATG 44353768 >seq10 Length=114683840 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGT 43978 || || ||| ||| ||||||||||| ||||| || | | || |||| |||| Sbjct 64670796 TGAAGAGTGGACTCCTTTTGAATATTGTAATCAGCCAAAGTCCTTCCGTCTTCCAGTTGT 64670855 Query 43979 TTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTT 44038 || || ||||| ||||||| |||||| || | || | |||||||| || ||| || Sbjct 64670856 TTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTC 64670915 Query 44039 TGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTT 44098 ||| || || ||| ||||| | |||||| || | ||||| || |||||||| Sbjct 64670916 GCTTTCACGTTATCAATCGTATCCGAGCTCTCCACTTCTAAAGTAATCGTCTTACCGGTC 64670975 Query 44099 AAAGTCTTCACAAATATTTGCAT 44121 |||||||| || || || ||||| Sbjct 64670976 AAAGTCTTGACGAAGATCTGCAT 64670998 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 43906 TCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTC 43965 || |||||||||||| || || || || ||||| |||||||| | || | Sbjct 38466667 TCGTAACACCAAATGGAGGGTCGATTCCTTCTGAATGTTATAATCAGCAAGAGTTCGGCC 38466608 Query 43966 ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTT 44025 ||| || | || ||||| ||||| ||||||| ||||||||| | || | ||||| || Sbjct 38466607 ATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCCGGTGGGATCCCTTCCTT 38466548 Query 44026 ATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAAT 44085 ||| ||| || || || || ||| ||||| | |||||| || | |||||| Sbjct 38466547 ATCCTGAATCTTGGCCTTAACATTATCAATCGTATCAGAACTCTCCACCTCCAACGTAAT 38466488 Query 44086 TGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || || | || || ||||| || ||||| Sbjct 38466487 AGTTTTTCCAGTGAGGGTTTTTACAAAAATCTGCAT 38466452 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 |||||||||||| || || || || ||||| ||||| || | || |||| Sbjct 38472376 TAACACCAAATGGAGGGTCGATTCCTTCTGAATGTTATAGTCCGCAAGAGTTCGGCCATC 38472317 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 || | || ||||| ||||| ||||||| ||||||||| | || | ||||| ||||| Sbjct 38472316 TTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCCAGTGGGATCCCTTCCTTATC 38472257 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 ||| || || || || ||| ||||| | |||||| || | |||||| || Sbjct 38472256 CTGAATCTTGGCCTTAACATTATCAATCGTATCAGAACTCTCCACCTCCAACGTAATAGT 38472197 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| ||||| | || || ||||| || ||||| Sbjct 38472196 TTTTCCGGTGAGGGTTTTTACAAAAATCTGCAT 38472164 >seq11 Length=105699404 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||| ||||| |||||||| || | | |||| ||||||||||| || ||||| Sbjct 76982995 CTCTTTCTGAATGTTATAATCAGCCAAAGTCCTCCCATCTTCCAATTGTTTGCCGGCAAA 76982936 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTAT-CTGAAATTTTTTGTTTGACCA 44048 || | || |||||| || | || | ||||| |||| ||||| | |||| | | || Sbjct 76982935 GATGAGCCTTTGCTGATCAGGTGGGATTCCTTCCTTATCCTGAA--TCTTTGCCTTAACA 76982878 Query 44049 TAG-CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTC 44107 | | ||| ||||| | || || || | || |||||||| || || |||||||| Sbjct 76982877 TTGTCAATGGTATCGGAGCTTTCAACCTCCAAGGTGATTGTTTTGCCTGTCAAAGTCTTG 76982818 Query 44108 ACAAATATTTGCAT 44121 ||||| || ||||| Sbjct 76982817 ACAAAAATCTGCAT 76982804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354451499406012