Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq11 100 2e-16 seq12 87.8 2e-12 seq10 87.8 2e-12 seq7 84.2 2e-11 >seq11 Length=105699404 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || ||||| ||||| || ||||| ||||| ||| ||| | ||||||||||||| Sbjct 76983006 TGAAGGGTAGACTCTTTCTGAATGTTATAATCAGCCAAAGTCCTCCCATCTTCCAATTGT 76982947 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 ||||| ||| | || ||||| || ||||| || | ||||| || || ||| ||| Sbjct 76982946 TTGCCGGCAAAGATGAGCCTTTGCTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTT 76982887 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 || || | | ||| | |||| ||| |||| ||| || |||||||| ||| Sbjct 76982886 GCCTTAACATTGTCAATGGTATCGGAGCTTTCAACCTCCAAGGTGATTGTTTTGCCTGTC 76982827 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 || || ||||||||||| ||||| Sbjct 76982826 AAAGTCTTGACAAAAATCTGCAT 76982804 >seq12 Length=146008498 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || ||||| || || || |||||||| ||| ||| | ||||||||||||| Sbjct 12766483 TGGAGAGTGGATTCCTTCTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAATTGT 12766542 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || || |||| | ||| || ||||| || | ||||||||||| ||| || Sbjct 12766543 TTCCCAGCGAAAATCAACCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTC 12766602 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 || || | | | | | |||| | ||| |||| || |||||||| || ||| Sbjct 12766603 GCCTTAACATTGTCGATCGTATCGGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTC 12766662 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 ||||| ||||| ||||| ||||| Sbjct 12766663 AACGTCTTGACGAAAATCTGCAT 12766685 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | |||||| |||||||| || || || || || || |||||||||||| || Sbjct 12766687 CCACCACGAAGCCTCAATACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCC 12766746 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || | || || | |||||| || ||| | || ||||| || || || || Sbjct 12766747 AAGGTGCGACCGTCCTCGAGTTGTTTCCCGGCAAATATGAGCCTTTGCTGGTCTGGTGGG 12766806 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG-T 20160 | |||||| ||||| || ||| || || | | ||| | || || || || Sbjct 12766807 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTC-AGAGCTTTCGAC 12766865 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| || ||||| |||||||||| |||||||| || || ||||| Sbjct 12766866 TTCCAAAGTTATGGTCTTGCCGGTCAGGGTTTTGACGAAGATCTGCAT 12766913 >seq10 Length=114683840 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || || || ||||| |||||||| ||| | | |||| ||| || | |||| Sbjct 38459742 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCAAGAGTTCGGCCATCCTCGAGTTGT 38459683 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| |||||||||||||||| || || | |||||||||||| ||||| Sbjct 38459682 TTTCCGGCAAAAATAAGCCTCTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATTTTG 38459623 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 || || | ||| || |||| |||| || | ||| |||||||| || || Sbjct 38459622 GCCTTGACATTATCAATAGTATCGGAGCTTTCCACCTCAAGGGTGATGGTTTTACCAGTA 38459563 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 | ||||| ||||| || ||||| Sbjct 38459562 AGGGTTTTCACAAAGATCTGCAT 38459540 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || || || ||||| || |||||||| ||| ||| | ||||||| |||| Sbjct 64670796 TGAAGAGTGGACTCCTTTTGAATATTGTAATCAGCCAAAGTCCTTCCGTCTTCCAGTTGT 64670855 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| |||| | ||| || ||||| || | ||||||||||| ||| || Sbjct 64670856 TTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTC 64670915 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 |||||| | ||| | ||| | || | ||| ||| | ||||| || || ||||| Sbjct 64670916 GCTTTCACGTTATCAATCGTATC-CGAGCTCTCCACTTCTAAAGTAATCGTCTTACCGGT 64670974 Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208 ||| || ||||| || || ||||| Sbjct 64670975 CAAAGTCTTGACGAAGATCTGCAT 64670998 >seq7 Length=127721098 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| || ||||| || || || || || |||||| | | ||| | |||||| Sbjct 86220368 ACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCAAGAGTCCTTCCATCTTCA 86220309 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | |||||| || ||| |||| | || ||||| || || | ||||||||||| | Sbjct 86220308 AGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCCTGA 86220249 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || || |||||| | ||| | ||| | ||| |||| |||||| || || Sbjct 86220248 ATCTTGGCTTTCACATTATCAATGGTATCCGAACTCTCCACCTCCAAGGTAATTGTCTTT 86220189 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || | ||||||||||| |||||||| Sbjct 86220188 CCAGTGAGAGTTTTGACAAAGATTTGCAT 86220160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419201528426739