Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28]
75,419 sequences; 1,694,597,732 total letters
Query= NC_005137.2
Length=131160
Score E
Sequences producing significant alignments: (Bits) Value
seq11 100 2e-16
seq12 87.8 2e-12
seq10 87.8 2e-12
seq7 84.2 2e-11
>seq11
Length=105699404
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065
|| || ||||| ||||| || ||||| ||||| ||| ||| | |||||||||||||
Sbjct 76983006 TGAAGGGTAGACTCTTTCTGAATGTTATAATCAGCCAAAGTCCTCCCATCTTCCAATTGT 76982947
Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125
||||| ||| | || ||||| || ||||| || | ||||| || || ||| |||
Sbjct 76982946 TTGCCGGCAAAGATGAGCCTTTGCTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTT 76982887
Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185
|| || | | ||| | |||| ||| |||| ||| || |||||||| |||
Sbjct 76982886 GCCTTAACATTGTCAATGGTATCGGAGCTTTCAACCTCCAAGGTGATTGTTTTGCCTGTC 76982827
Query 20186 AACGTTTTGACAAAAATTTGCAT 20208
|| || ||||||||||| |||||
Sbjct 76982826 AAAGTCTTGACAAAAATCTGCAT 76982804
>seq12
Length=146008498
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065
|| || || ||||| || || || |||||||| ||| ||| | |||||||||||||
Sbjct 12766483 TGGAGAGTGGATTCCTTCTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAATTGT 12766542
Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125
|| || || |||| | ||| || ||||| || | ||||||||||| ||| ||
Sbjct 12766543 TTCCCAGCGAAAATCAACCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTC 12766602
Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185
|| || | | | | | |||| | ||| |||| || |||||||| || |||
Sbjct 12766603 GCCTTAACATTGTCGATCGTATCGGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTC 12766662
Query 20186 AACGTTTTGACAAAAATTTGCAT 20208
||||| ||||| ||||| |||||
Sbjct 12766663 AACGTCTTGACGAAAATCTGCAT 12766685
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041
|| || || | |||||| |||||||| || || || || || || |||||||||||| ||
Sbjct 12766687 CCACCACGAAGCCTCAATACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCC 12766746
Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101
| || | || || | |||||| || ||| | || ||||| || || || ||
Sbjct 12766747 AAGGTGCGACCGTCCTCGAGTTGTTTCCCGGCAAATATGAGCCTTTGCTGGTCTGGTGGG 12766806
Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG-T 20160
| |||||| ||||| || ||| || || | | ||| | || || || ||
Sbjct 12766807 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTC-AGAGCTTTCGAC 12766865
Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
||||| || ||||| |||||||||| |||||||| || || |||||
Sbjct 12766866 TTCCAAAGTTATGGTCTTGCCGGTCAGGGTTTTGACGAAGATCTGCAT 12766913
>seq10
Length=114683840
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065
|| || || || || ||||| |||||||| ||| | | |||| ||| || | ||||
Sbjct 38459742 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCAAGAGTTCGGCCATCCTCGAGTTGT 38459683
Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125
|| || ||| |||||||||||||||| || || | |||||||||||| |||||
Sbjct 38459682 TTTCCGGCAAAAATAAGCCTCTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATTTTG 38459623
Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185
|| || | ||| || |||| |||| || | ||| |||||||| || ||
Sbjct 38459622 GCCTTGACATTATCAATAGTATCGGAGCTTTCCACCTCAAGGGTGATGGTTTTACCAGTA 38459563
Query 20186 AACGTTTTGACAAAAATTTGCAT 20208
| ||||| ||||| || |||||
Sbjct 38459562 AGGGTTTTCACAAAGATCTGCAT 38459540
Score = 82.4 bits (90), Expect = 6e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065
|| || || || || ||||| || |||||||| ||| ||| | ||||||| ||||
Sbjct 64670796 TGAAGAGTGGACTCCTTTTGAATATTGTAATCAGCCAAAGTCCTTCCGTCTTCCAGTTGT 64670855
Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125
|| || ||| |||| | ||| || ||||| || | ||||||||||| ||| ||
Sbjct 64670856 TTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTC 64670915
Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGGT 20184
|||||| | ||| | ||| | || | ||| ||| | ||||| || || |||||
Sbjct 64670916 GCTTTCACGTTATCAATCGTATC-CGAGCTCTCCACTTCTAAAGTAATCGTCTTACCGGT 64670974
Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208
||| || ||||| || || |||||
Sbjct 64670975 CAAAGTCTTGACGAAGATCTGCAT 64670998
>seq7
Length=127721098
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059
|||||||| || ||||| || || || || || |||||| | | ||| | ||||||
Sbjct 86220368 ACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCAAGAGTCCTTCCATCTTCA 86220309
Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119
| |||||| || ||| |||| | || ||||| || || | ||||||||||| |
Sbjct 86220308 AGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCCTGA 86220249
Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179
|| || |||||| | ||| | ||| | ||| |||| |||||| || ||
Sbjct 86220248 ATCTTGGCTTTCACATTATCAATGGTATCCGAACTCTCCACCTCCAAGGTAATTGTCTTT 86220189
Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208
|| || | ||||||||||| ||||||||
Sbjct 86220188 CCAGTGAGAGTTTTGACAAAGATTTGCAT 86220160
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419201528426739
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |