Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq13 102 7e-17 seq12 95.1 1e-14 seq10 93.3 4e-14 seq11 86.0 5e-12 >seq13 Length=144148110 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 |||||| || |||||| |||||| || ||||||||||||||||| || | ||||| Sbjct 116705234 CACTAAGTGGAGTGTGGACTCCTTCTGGATGTTGTAATCAGCCAACGTGCGGCCATCCTC 116705175 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || |||||||| || | || || | ||||| || || | | |||||||||| Sbjct 116705174 AAGTTGCTTACCAGCGAAGATCAACCTTTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTG 116705115 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||| | | | || ||||| | | |||| ||| | ||| ||||| || Sbjct 116705114 AATCTTGGCCTTTACATTGTCAATAGTATCAGAACTCTCCACCTCCAATGTGATGGTCTT 116705055 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||||||| || || || ||||| |||||| Sbjct 116705054 TCCGGTGAGGGTCTTGACGAAAATTTGCATC 116705024 >seq12 Length=146008498 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| |||||||||||||| ||||| || ||||||| ||||| || ||| || | Sbjct 24218494 TCCTTCTGAATGTTGTAATCGGCCAAGGTACGGCCGTCCTCGAGCTGTTTGCCGGCGAAG 24218435 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | ||||||||| || || | | ||||||||| |||||| ||| | | Sbjct 24218434 ATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTTACATTA 24218375 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | ||||| || | | ||| ||||| || ||||| || ||||| || ||||| || Sbjct 24218374 TCGATGGTGTCAGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTAAGGGTTTTGACG 24218315 Query 48716 AAAATCTGCATC 48727 || ||||||||| Sbjct 24218314 AAGATCTGCATC 24218303 >seq10 Length=114683840 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 48514 TAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTC 48573 |||||| ||||| || || ||||| |||||||| |||||||| | ||| | || Sbjct 38466664 TAACACCAAATGGAGGGTCGATTCCTTCTGAATGTTATAATCAGCAAGAGTTCGGCCATC 38466605 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 || |||||||| || | |||| || | |||||| ||| || | | |||||| || Sbjct 38466604 TTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCCGGTGGGATCCCTTCCTTATC 38466545 Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 | ||| || ||| | | | || ||||| | | |||| ||| | || || || Sbjct 38466544 CTGAATCTTGGCCTTAACATTATCAATCGTATCAGAACTCTCCACCTCCAACGTAATAGT 38466485 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| || ||||| ||||| ||||||||||||||| Sbjct 38466484 TTTTCCAGTGAGGGTTTTTACAAAAATCTGCATC 38466451 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 48514 TAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTC 48573 |||||| ||||| || || ||||| |||||||| || || || | ||| | || Sbjct 38472376 TAACACCAAATGGAGGGTCGATTCCTTCTGAATGTTATAGTCCGCAAGAGTTCGGCCATC 38472317 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 || |||||||| || | |||| || | |||||| |||| || | | |||||| || Sbjct 38472316 TTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCCAGTGGGATCCCTTCCTTATC 38472257 Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 | ||| || ||| | | | || ||||| | | |||| ||| | || || || Sbjct 38472256 CTGAATCTTGGCCTTAACATTATCAATCGTATCAGAACTCTCCACCTCCAACGTAATAGT 38472197 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| |||||||| ||||| ||||||||||||||| Sbjct 38472196 TTTTCCGGTGAGGGTTTTTACAAAAATCTGCATC 38472163 >seq11 Length=105699404 Score = 86.0 bits (94), Expect = 5e-12 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTC-GCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 || || || ||||| |||||||| || ||| | |||| || ||||| || || || | Sbjct 76982538 TCTTTCTGGATGTTATAATCAGC-AAGGGTCCGACCGTCTTCGAGCTGTTTGCCAGCGAA 76982480 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 ||| | ||||||||| || || | | ||||||||| || || ||||| | Sbjct 76982479 AATGAGACGCTGCTGGTCGGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGACGTT 76982420 Query 48653 GACGCTATGGTATCGGTAGACTCCGTC-TCGACTGTTATGGTTTTACCGGTGAGAGTTTT 48711 | || ||||| |||| || | || | |||| ||||||||| || ||||| || ||||| Sbjct 76982419 GTCG--ATGGTGTCGG-AGCTTTCGACCTCGAGTGTTATGGTCTTGCCGGTAAGGGTTTT 76982363 Query 48712 CACAAAAATCTGCATC 48727 |||||| ||||||||| Sbjct 76982362 CACAAAGATCTGCATC 76982347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420863998929419