Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1 114 7e-21 seq30661 113 2e-20 seq12 111 8e-20 seq13 107 1e-18 seq11 107 1e-18 seq10 107 1e-18 seq9 107 1e-18 seq3 105 3e-18 seq5 104 1e-17 seq8 102 4e-17 seq7 100 1e-16 seq6 100 1e-16 seq4 100 1e-16 >seq1 Length=147124936 Score = 114 bits (126), Expect = 7e-21 Identities = 80/91 (88%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATC--AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||||||||| ||| ||||||||| | | |||||||| ||||||||||||||||||| Sbjct 118306000 AATAAAAAATATTAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 118305941 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| ||||||||||||||| |||| Sbjct 118305940 ACGACGCTCTAACCAACTGAGCTAATAGGCC 118305910 Score = 113 bits (124), Expect = 2e-20 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | ||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 20782346 ATTGGCCCATGCAGGGATCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 20782287 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 20782286 GCTGAGCTAATAGGCC 20782271 Score = 93.3 bits (102), Expect = 2e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 94602495 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 94602554 Query 11512 CAACTGAGCTAAT 11524 || |||| |||| Sbjct 94602555 CAGCTGATGTAAT 94602567 >seq30661 Length=33695 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || || |||| ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 6918 AAAAACAAATAAAAGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 6977 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 6978 GACGCTCTAACCAACTGAGCTAATAGGCC 7006 >seq12 Length=146008498 Score = 111 bits (122), Expect = 8e-20 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 46247340 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 46247281 Query 11512 CAACTGAGCTAATGGGCCGT 11531 ||||||||||||| |||||| Sbjct 46247280 CAACTGAGCTAATAGGCCGT 46247261 >seq13 Length=144148110 Score = 107 bits (118), Expect = 1e-18 Identities = 80/93 (86%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || ||| | || ||||| | |||||||| | | |||||||| ||||||||||||||||| Sbjct 6232761 AAATAAAATAAGATCAAGT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTA 6232819 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||||||||||| |||| Sbjct 6232820 GCACGACGCTCTAACCAACTGAGCTAATAGGCC 6232852 >seq11 Length=105699404 Score = 107 bits (118), Expect = 1e-18 Identities = 78/90 (87%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| | || ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 8443274 AATAAAACGTAAA--TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 8443217 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| ||||||||||||||| ||||| Sbjct 8443216 GACGCTCTAACCAACTGAGCTAATAGGCCG 8443187 >seq10 Length=114683840 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 47079527 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 47079468 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 47079467 ACTGAGCTAATAGGCC 47079452 Score = 105 bits (116), Expect = 3e-18 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 77924813 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 77924754 Query 11516 TGAGCTAATGGGCCGTCGAC 11535 ||||||||| |||||| ||| Sbjct 77924753 TGAGCTAATAGGCCGTTGAC 77924734 Score = 105 bits (116), Expect = 3e-18 Identities = 76/87 (87%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||| |||| || ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 77925898 AAAATATCATAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 77925839 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| | ||||||||||||| |||| Sbjct 77925838 CGCTCTAAACAACTGAGCTAATAGGCC 77925812 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||| ||||||| |||||| Sbjct 77925731 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACCACGCTCTAACCAAC 77925672 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 77925671 TGAGCTAATGGGCC 77925658 Score = 100 bits (110), Expect = 1e-16 Identities = 78/93 (84%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 || |||||| || | ||||||||| | | |||||||| ||||||||||||||||||| Sbjct 77990879 AAGAAAAAAGCACTTAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 77990938 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||| |||| |||| |||||||||| |||||| Sbjct 77990939 ACGACACTCTAACCAGCTGAGCTAATAGGCCGT 77990971 Score = 100 bits (110), Expect = 1e-16 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||||||| | | || ||||| ||||||||||||||||||||| ||||||| ||| Sbjct 89913750 AATTGGCCCATGCAGGTCTCAAACCTGCGACCTTCGCGTTATTAGCACAACGCTCTAACC 89913809 Query 11513 AACTGAGCTAATGGGCCGT 11531 | |||||||||| |||||| Sbjct 89913810 AGCTGAGCTAATAGGCCGT 89913828 Score = 98.7 bits (108), Expect = 5e-16 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| |||||||||||||||||||||||| |||| |||| | Sbjct 77990732 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACACTCTAACCAGC 77990791 Query 11516 TGAGCTAATGGGCCGT 11531 ||||||||| |||||| Sbjct 77990792 TGAGCTAATAGGCCGT 77990807 Score = 82.4 bits (90), Expect = 4e-11 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||| ||| | | |||||||| | ||||||||||||||||||||||||||| ||| Sbjct 77991076 AAATGGCCGATGCAGGTCTCGAACCTGCTACCTTCGCGTTATTAGCACGACGCTCTAACC 77991135 Query 11513 AACTGAGCTAAT 11524 | ||||| |||| Sbjct 77991136 AGCTGAGTTAAT 77991147 >seq9 Length=96604005 Score = 107 bits (118), Expect = 1e-18 Identities = 75/85 (88%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11446 AAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| | || ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 24164525 AAAATGATAAGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 24164584 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 24164585 CTCTAACCAACTGAGCTAATAGGCC 24164609 Score = 105 bits (116), Expect = 3e-18 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 12253041 AAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 12252982 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 12252981 AACTGAGCTAATAGGCC 12252965 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 12249777 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 12249836 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 12249837 TGAGCTAATAGGCC 12249850 Score = 100 bits (110), Expect = 1e-16 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| |||||||||||||||||| |||||||||| ||| Sbjct 24162188 AAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGGACGACGCTCTAACC 24162247 Query 11513 AACTGAGCTAATGGGCCGT 11531 | |||||||||| |||||| Sbjct 24162248 AGCTGAGCTAATAGGCCGT 24162266 >seq3 Length=102937913 Score = 105 bits (116), Expect = 3e-18 Identities = 74/84 (88%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| || || |||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 27988671 AAAAACAGAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 27988729 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 27988730 TCTAACCAACTGAGCTAATAGGCC 27988753 Score = 86.0 bits (94), Expect = 3e-12 Identities = 75/93 (81%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || ||||| |||| ||| |||||| || | | ||||| || ||| ||| ||||||||| Sbjct 49936218 AAATAATACAAAAACAA--TGGCCCTTGCAGGTTTCGAATCTACGATCTTTGCGTTATTA 49936161 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||| |||||||||||||| |||| Sbjct 49936160 GCATGACGCTCTATCCAACTGAGCTAATAGGCC 49936128 >seq5 Length=59691364 Score = 104 bits (114), Expect = 1e-17 Identities = 73/83 (88%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||||||||| |||||||| | | |||||||| ||||||||||||||||||||| | || Sbjct 29452299 AAAATCAAAT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACAATGC 29452357 Query 11506 TCTRACCAACTGAGCTAATGGGC 11528 ||| ||||||||||||||| ||| Sbjct 29452358 TCTAACCAACTGAGCTAATAGGC 29452380 >seq8 Length=127390875 Score = 102 bits (112), Expect = 4e-17 Identities = 80/94 (85%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 11442 ATAAAA-AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||| ||| | ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 13891927 ATAAAATAATGATGATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 13891868 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 |||||||| |||| |||||||||| |||| |||| Sbjct 13891867 GACGCTCTAACCAGCTGAGCTAATAGGCC-TCGA 13891835 >seq7 Length=127721098 Score = 100 bits (110), Expect = 1e-16 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 29373289 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 29373230 Query 11516 TGAGCTAATGGGCC-GTCGACGATTGTGATT 11545 ||||||||| |||| || ||| ||||| || Sbjct 29373229 TGAGCTAATAGGCCAGTTGAC-TTTGTGTTT 29373200 >seq6 Length=121339338 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||| ||||||||||||| ||||||| |||||| Sbjct 53716457 TGGCCCATGCAGGTCTCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAAC 53716398 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 53716397 TGAGCTAATGGGCC 53716384 >seq4 Length=137675496 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | | |||||| ||||||||||||||||||||||||||||| |||||| Sbjct 99396042 TGGCCCATGCAGGTCTTGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 99396101 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 99396102 TGAGCTAATAGGCC 99396115 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261250845378844