Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq8 163 4e-36 seq3 149 1e-31 seq2 147 3e-31 seq13 138 2e-28 seq7 136 6e-28 seq10 123 4e-24 >seq8 Length=127390875 Score = 163 bits (180), Expect = 4e-36 Identities = 180/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||| ||||| ||||| || ||||||||| ||||||||||||| ||||| Sbjct 103578960 GATAACATCCAAGGTATCACTAAGCCGGCCATCCGTCGTTTGGCTCGTCGTGGAGGAGTT 103578901 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | || ||| ||| |||||||||| | | | || |||||||| ||| | || Sbjct 103578900 AAGAGAATCAGTGGCTTGATCTATGAAGAAACCAGAGGAGTGTTGAAGATTTTCTTGGAG 103578841 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | ||||| | || || |||||||||| | | ||||| || || || Sbjct 103578840 AACGTCATTCGCGATGCAGTGACTTACACTGAGCACGCTAGAAGGAAGACCGTGACGGCC 103578781 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || ||||| |||||| | ||||| |||| | ||||| ||||| ||||| Sbjct 103578780 ATGGATGTTGTTTATGCTTTGAAAAGGCAAGGTCGTACTCTCTATGGATTTGGTGGTTAA 103578721 Score = 141 bits (156), Expect = 1e-29 Identities = 168/225 (75%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || || || ||||||||||| |||||||| || || || || Sbjct 103487972 GCAAAGCGCCACCGCAAGGTC-CTCCGTGATAACATCCAGGGAATCACGAAACCGGCGAT 103488030 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| |||||| | || || ||||||||| || ||| ||| |||| || || | Sbjct 103488031 CCGGCGTCTAGCTCGTAGGGGAGGTGTCAAGCGTATCAGTGGCTTGATCTACGAGGAAAC 103488090 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || |||||||||||| | ||| ||| |||| || || | ||| || || Sbjct 103488091 CCGTGGAGTGTTGAAGATCTTCTTGGAGAACGTGATCCGCGACGCCGTGACCTACACTGA 103488150 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 |||||| | | ||||| || ||| |||||||| |||| ||||| Sbjct 103488151 GCACGCCAGGAGAAAGACGGTGACCGCCATGGATGTCGTTTATGC 103488195 >seq3 Length=102937913 Score = 149 bits (164), Expect = 1e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| || || || ||||| || || || ||| |||||||||| || || | Sbjct 42040751 GAGACAACATCCAGGGCATTACTAAGCCTGCCATTCGCCGTTTGGCTCGTCGAGGAGGTG 42040692 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 ||||| | || ||| ||| |||||||||| | | | | || |||||||| ||| | Sbjct 42040691 TCAAGAGGATCAGTGGCTTGATCTATGAAGAAACTAGGGGAGTATTGAAGATTTTCTTGG 42040632 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||||||| | |||||||||||||| | | ||||| || ||| Sbjct 42040631 AGAATGTGATTCGTGATGCTGTGACTTATACCGAGCACGCCAGGAGGAAGACCGTTACCG 42040572 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || ||||| |||||| | || ||| | | | ||||||||||| ||| Sbjct 42040571 CCATGGATGTTGTTTATGCCTTGAAAAGGCAGGGCAGGACTCTCTATGGTTTTGGTGGTT 42040512 Query 16698 AA 16699 || Sbjct 42040511 AA 42040510 >seq2 Length=101023042 Score = 147 bits (162), Expect = 3e-31 Identities = 195/271 (72%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||| | ||||| | ||| ||||||||||| || || ||||||||||| || || Sbjct 1065828 GCTAAGAGGCATCGTAAGGTTCTCCGAGATAACATTCAGGGCATCACCAAGCCGGCGATT 1065769 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || | | |||||| | || || || ||| | | ||| ||| |||| || || | | Sbjct 1065768 CGGAGATTAGCTCGTAGAGGCGGCGTGAAGAGGATTAGTGGTTTGATCTACGAGGAAACT 1065709 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||| | ||||||||||| | | |||||| | ||||| || |||||| ||| Sbjct 1065708 CGTGGTGTTCTCAAGATCTTCCTTGAAAACGTTATACGCGATGCCGTCACCTATACGGAG 1065649 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||||| ||||||||||| ||| | |||||| |||| ||||| | || | ||||| Sbjct 1065648 CACGCTAGGCGTAAGACTGTTACCGCTATGGATGTCGTTTATGCTCTCAAGAGACAAGGA 1065589 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 | | |||| ||||| || ||| || || Sbjct 1065588 AGGACTCTTTACGGTTTCGGCGGTTGATTTT 1065558 Score = 138 bits (152), Expect = 2e-28 Identities = 193/271 (71%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||| | ||||| | | ||| ||||||||||| ||||| ||||| ||||| || || Sbjct 69433082 GCTAAGAGGCATCGGAAAGTTCTCCGAGATAACATTCAAGGCATCACTAAGCCGGCGATT 69433023 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||| | | |||||| | || || || ||| | || ||| || |||| || || | | Sbjct 69433022 CGTAGGTTAGCTCGTAGAGGCGGTGTGAAGAGGATCAGTGGCCTGATCTACGAGGAAACT 69432963 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | |||||||| || | | |||||| | |||||| | |||||| || Sbjct 69432962 CGTGGAGTTCTCAAGATCTTTCTGGAAAACGTTATACGCGATGCTGTTACCTATACGGAA 69432903 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||||| ||||| ||||| ||| | |||||| | || ||||| | || | ||||| Sbjct 69432902 CACGCTAGGCGTAAAACTGTTACCGCTATGGATGTTGTTTATGCTCTCAAGAGACAAGGA 69432843 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 | | |||||||||| || ||| || || Sbjct 69432842 AGGACTCTTTATGGTTTCGGTGGTTGATTTT 69432812 >seq13 Length=144148110 Score = 138 bits (152), Expect = 2e-28 Identities = 193/268 (72%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | | || || || || || ||||| ||||| || ||||| ||||| Sbjct 129614882 GCGAAGCGTCACCGTAAGGTC-CTCCGTGACAATATCCAGGGAATTACGAAGCCGGCTAT 129614940 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| |||||||| | || || || |||||| || || ||| |||| ||||| | Sbjct 129614941 TCGGCGTTTGGCTCGTAGGGGAGGCGTTAAGCGTATCAGCGGCTTGATCTACGAAGAAAC 129615000 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| | ||||||||||| ||| ||| || | ||| ||| || ||| || || Sbjct 129615001 CCGTGGTGTTCTTAAGATCTTCCTGGAGAACGTGATTCGTGACGCTGTCACCTACACAGA 129615060 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | | |||||||| || | |||||| | || |||||| | || | || || Sbjct 129615061 GCACGCGAGGAGAAAGACTGTGACTGCTATGGATGTGGTTTATGCACTCAAGAGGCAGGG 129615120 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | | ||||| || || ||||| Sbjct 129615121 CAGGACTTTGTATGGATTCGGTGGTTAA 129615148 >seq7 Length=127721098 Score = 136 bits (150), Expect = 6e-28 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||| || || || |||||||| || || || ||| |||||||| | || || || Sbjct 61296011 GACAACATTCAGGGCATTACCAAGCCTGCGATTCGCCGTTTGGCTCGTAGGGGAGGTGTG 61295952 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | | || ||| |||| ||||| | || | || |||||||||||| | || Sbjct 61295951 AAGAGAATTAGCGGTTTGATCTACGAAGAAACCCGAGGCGTATTGAAGATCTTCTTGGAG 61295892 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | |||||| | || || |||||||| | | | |||||||| ||| || Sbjct 61295891 AACGTGATTCGTGATGCAGTGACATACACTGAGCACGCCAGAAGGAAGACTGTTACCGCC 61295832 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || ||||| |||||| | |||||| | | | |||||||||||| ||||| Sbjct 61295831 ATGGATGTTGTTTATGCCTTGAAAAGGCAAGGCAGGACTCTCTATGGTTTTGGAGGTTAA 61295772 >seq10 Length=114683840 Score = 123 bits (136), Expect = 4e-24 Identities = 187/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | ||| || ||||| ||||| || ||||| ||||| || || Sbjct 88422555 GCAAAGCGCCATCGTAAGGTTCTCCGTGATAATATCCAGGGTATCACAAAGCCGGCAATT 88422614 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||||||| | || || || |||||| || || | |||| || || | Sbjct 88422615 CGGCGTTTGGCTCGTAGAGGAGGCGTTAAGCGTATCAGCGGTCTAATCTACGAGGAAACC 88422674 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||||||||||||||| | ||| ||| || | |||||| | ||| ||||| Sbjct 88422675 CGTGGGGTTTTGAAGATCTTCTTGGAGAACGTGATTCGTGATGCAGTAACCTACACCGAA 88422734 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || | | |||||||| || | |||||| | || |||||| |||| | || ||| Sbjct 88422735 CATGCGAGGAGGAAGACTGTGACTGCTATGGATGTGGTTTATGCACTGAAGAGGCAGGGC 88422794 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 | | | ||||| ||||| |||| Sbjct 88422795 AGGACATTGTATGGGTTTGGTGGTTA 88422820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79006243880367