Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq7140 86.0 1e-12 >seq7140 Length=696 Score = 86.0 bits (94), Expect = 1e-12 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 7272 CATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAA 7331 |||||| || | | ||||||||| |||| ||| | ||| | || ||||| || Sbjct 29 CATGTCTGTTGTTATATGATCATCGTAAACATGACGTAAATTGGTATCGTCTTGCTTAAA 88 Query 7332 CAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTG 7391 | || | || || | ||| |||||||||| ||||| ||||| || | ||||| || Sbjct 89 AATTACCAAAAGATTCGAATTGTCTCTAATCAACTGCTTCGGTATACGACTGTAAGTCTG 148 Query 7392 ACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTG 7451 | |||||||| | || || | ||||||| ||||| | |||| | || || Sbjct 149 TCCCAGATAGAAACAATCGACGCCACTGTGTCGTCCCATACTGAAATATTCTCGCATTAC 208 Query 7452 ATCCTGTTTTTCACAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATC 7508 ||| || || || ||||| ||||||||||| || | | ||| || ||| ||||| Sbjct 209 ATCATGCTTATCGCAAGCTACATCGTCAAAAATGAAAATGGAATTCTTCTTCGCATC 265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97886654066126