Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq9 109 6e-19 seq1 109 6e-19 >seq9 Length=96604005 Score = 109 bits (120), Expect = 6e-19 Identities = 285/437 (65%), Gaps = 5/437 (1%) Strand=Plus/Minus Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 ||| ||| || || |||||||| || | ||||||||| | ||||| || || || | Sbjct 49336398 ACAGCAAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGA 49336339 Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA-AATGCTCCT 21586 | ||||| ||||||||||| || ||||||||||||||||||| || | || || ||| Sbjct 49336338 AAGTTAATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATA-TGGCACAGAAACTTCCG 49336280 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCT 21646 || || || || ||||| ||| |||||| || | ||| ||||| || | || |||| Sbjct 49336279 GAGAAAAAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAA---AGTTTCT 49336223 Query 21647 TTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCA 21706 | |||||||| ||||| | || |||| | ||| | || || Sbjct 49336222 CCGCCGTCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCG 49336163 Query 21707 ATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNA 21766 || || |||||| | || ||||| || ||| ||||| | Sbjct 49336162 ATGGCGCGGAAAAGACGGTTCTTTTCGTCGGAATCTTTTATGTAAGTCTCGAGAAGGAGA 49336103 Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826 || ||||| || || || |||||||| || || || || || || |||||| | ||| Sbjct 49336102 CTGTACATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCC 49336043 Query 21827 TCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCA 21886 || || ||| ||||| || || ||| | ||| ||| ||||| ||||| Sbjct 49336042 TCGGAGATTTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCG 49335983 Query 21887 CTGGCGGCAAAAAATGC 21903 |||||||||||| || Sbjct 49335982 GAGGCGGCAAAAAAGGC 49335966 >seq1 Length=147124936 Score = 109 bits (120), Expect = 6e-19 Identities = 301/458 (66%), Gaps = 24/458 (5%) Strand=Plus/Plus Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 || ||||| || | |||||| || ||||| ||||| || || |||| |||||| || | Sbjct 98686984 TTCTGATACTCTCCAACTCTCTTCTCGAAGAAATTGGTTTTCCCTTGCAATGAAATTAGT 98687043 Query 21245 TCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304 ||||| ||||||| || || | | || | ||||| | | || | || ||| Sbjct 98687044 TCCATCCAATCAAAAGGGTTAGCCGCATTGTACATTTTGCCATACCCTAAAGCTCCTAAC 98687103 Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364 || | ||| || || || || || ||||||| ||| || |||| |||||| || | || Sbjct 98687104 AACCGATCCGCAACGAACTCAATGTATTGACTCATCAACTCACCATTCATCCCAACTAAC 98687163 Query 21365 TTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCA---ACAATT 21421 ||||||||| | | ||| | |||||| | || || ||| || ||| Sbjct 98687164 GCGCAAGGAAGAGCGTCGCATACAAACTCCCTCTCTATATACACCGCATCACTCACTATT 98687223 Query 21422 ATATTTA-------TTATCCTAGATGT-ACTAGGGGGATACAATAATTGTTTAAACATCA 21473 || | || | ||| | | ||| | ||| | | || || || Sbjct 98687224 CCCTTCACGCGCTCTTCACTTAGCTTTGACT-GAAGGAGAGAGTA----------CAGCA 98687272 Query 21474 AACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTA 21533 | || ||||| || ||||| | ||||||||| | | || || || || || || |||| Sbjct 98687273 AGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTA 98687332 Query 21534 AACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAG 21592 | || |||||||| || | |||||||||||||||||| | |||| | || || || || Sbjct 98687333 ATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCG-CGCAGAAACTGCCGGAGAAA 98687391 Query 21593 AAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630 || ||||| || ||| ||| || || | ||| ||||| Sbjct 98687392 AATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTC 98687429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531399357169560