Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq9 163 4e-35 seq1 150 2e-31 seq2 100 4e-16 seq4 87.8 2e-12 >seq9 Length=96604005 Score = 163 bits (180), Expect = 4e-35 Identities = 562/871 (65%), Gaps = 8/871 (1%) Strand=Plus/Minus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 ||||| || || || || | ||| ||||| ||||| ||||| |||| ||| ||||| | Sbjct 49336681 TTTTGATACTCTCCAACTCTTTTCTCGAAGAAATTGGTTTTCCCTTGCAACGATATCAGT 49336622 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| ||||||| || ||| || || || || ||| | || || | | | Sbjct 49336621 TCCATCCAATCAAATGGGTTGACCACGTTGTACATCTTTCCGTACCCTAACGCTCCCAAC 49336562 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 || | |||||| ||||| || || || |||| | || | ||||| || | | Sbjct 49336561 AACCGATCCGCTACGAACTCGATGTACTGACTCATTAACTCGCCGTTCATCCCAACCAAC 49336502 Query 33193 TTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 33250 || ||||| |||| || ||| | | | | | ||| ||||| || ||| | Sbjct 49336501 GCGCAGGGCAGAGCATCGCA-TACGAACTCCCTCT-CTATGTCCACCGCGTCCCTTACTA 49336444 Query 33251 TAGATCTAACGGTTTCTTCACTCGG--TGGATGCAATAAATGTTTAAACATCAAACATGC 33308 | ||| ||| |||||||||| | | || | | | || || ||| || || Sbjct 49336443 TCCCTCTCACGCGTTCTTCACTCAGCTTTGACCTGAGGAGAGAGTA--CAGCAAGCAAGC 49336386 Query 33309 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGG 33368 |||||| ||||| ||||| || |||| |||| ||||| || || || | |||||| Sbjct 49336385 GAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAATCCGGG 49336326 Query 33369 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCC 33428 ||||| || | |||||| | ||||||||||| | ||| ||| || || ||||| || Sbjct 49336325 CATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAGATCCC 49336266 Query 33429 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTT 33488 ||||| |||||| || || | | || | || | | | | | ||||| || Sbjct 49336265 CTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGTCGATCCATTT 49336206 Query 33489 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33548 |||||| ||||| || || ||||| |||| ||| || ||||| || ||| Sbjct 49336205 CATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCGCGGAAAAGACG 49336146 Query 33549 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 33608 ||| ||||| | |||||| | ||||| |||| | ||||| ||||| || || || Sbjct 49336145 GTTCTTTTCGTCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTACATCTCGGAGTG 49336086 Query 33609 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 33668 || ||||| || || || || || || || ||| | ||||||| || || || || Sbjct 49336085 GATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAGATTTGGACCTC 49336026 Query 33669 TGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33728 | | || || | || | || ||| ||||| || || ||| |||||||| || Sbjct 49336025 TTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCGGCAAAAAAGGC 49335966 Query 33729 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33788 | || || | || || | | ||||| | || || | ||| | | | | | Sbjct 49335965 GAGAACGTGACTAATGAAGTGGTGCTCGTCAGCGGTGAGAGCTTCCCAGTGACGAAGAAC 49335906 Query 33789 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTT 33848 ||| | ||| ||||| || | |||||||| || || || || || || ||||| | Sbjct 49335905 GGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACATTTC 49335846 Query 33849 CCAGATGTCATAATATTGGATTGGGAAAATA 33879 ||| | || |||||||| ||||| ||| Sbjct 49335845 CCATACTTCTGGGTATTGGATCGGGAACATA 49335815 >seq1 Length=147124936 Score = 150 bits (166), Expect = 2e-31 Identities = 419/635 (66%), Gaps = 12/635 (2%) Strand=Plus/Plus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 || || || || || || | || ||||| ||||| ||||| |||| |||||| || | Sbjct 98686984 TTCTGATACTCTCCAACTCTCTTCTCGAAGAAATTGGTTTTCCCTTGCAATGAAATTAGT 98687043 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| ||||||| || || | |||| || ||||| | | || || | | | Sbjct 98687044 TCCATCCAATCAAAAGGGTTAGCCGCATTGTACATTTTGCCATACCCTAAAGCTCCTAAC 98687103 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTA-TAA- 33190 || | |||||| ||||| || || ||| |||||| |||| |||||| || | ||| Sbjct 98687104 AACCGATCCGCAACGAACTCAATGTATTGACTCATCAACTCACCATTCATCCCAACTAAC 98687163 Query 33191 GTTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTAT 33248 | || |||||||| |||| | ||| || || || | |||||||| | | Sbjct 98687164 GCGCAA--GGAAGAGCGTCGCAT--ACAAACTCCCTCTCTATATACACCGCATCACTCAC 98687219 Query 33249 AATAGATCTAACGGTTTCTTCACTCGG--TGGATGCAATAAATGTTTAAACATCAAACAT 33306 || | ||| |||||||| | | || || | | || || ||| || Sbjct 98687220 TATTCCCTTCACGCGCTCTTCACTTAGCTTTGACTGAAGGAGAGAGTA--CAGCAAGCAA 98687277 Query 33307 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 33366 || || ||||| || ||||| || |||| | || | ||||| || || || | ||| Sbjct 98687278 GCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAATCCA 98687337 Query 33367 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATT 33426 ||||||| || |||||||| | ||||||||| | ||| || || || || || Sbjct 98687338 GGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCGGAGAAAAATATG 98687397 Query 33427 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCAC 33486 |||||||| ||| || || || | | || || || | ||| | | | ||||| Sbjct 98687398 CCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCCGCCGTCGATCCAT 98687457 Query 33487 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33546 || |||||||||||| || || || || |||| |||||| | || | ||||| Sbjct 98687458 TTGAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCGTGGAAGAGG 98687517 Query 33547 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33606 ||||||||| | |||||| | |||||| |||| | ||||||||||| || || Sbjct 98687518 CGGTTTTTTTCGGTGGCATCTTTGATATAAGTTTCGAGGAGGAGACTATACATCTCAGAG 98687577 Query 33607 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33641 || || || || ||||| || || ||||| || || Sbjct 98687578 TGGATATTCTCGATGGCGATTTGGAATCCATAAAA 98687612 >seq2 Length=101023042 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 |||||| ||||| || | || |||||||| || ||||||||| ||| ||| | | | Sbjct 61425397 AGTTCCAGCATTGAAAAGTGTGGGAGAAGCATGAGTAAACCATCTTTGAGACATCATGTG 61425456 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || | ||||| || || || || | ||||||||| ||||| || | |||||| Sbjct 61425457 ATAAGTTTTTATAGCAGAATCAATGTCATTCTTATGAATTCCAACTGCAACCCTCATTAA 61425516 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||| || || ||||| | | ||| | | ||| || | |||||| | || | Sbjct 61425517 CATGTGTTGGGGCCTTTCTATAACCTTCCCTTGAACTTTTAAGAGGTAGGACCTCTCAAG 61425576 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||||| ||||||||||| | || |||||| || || || || || Sbjct 61425577 GGTTTTGAAACCAAAATAATCATAGTCAAAGTCCCGATCATATATGAT 61425624 >seq4 Length=137675496 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 ||| || ||||| || | || |||||||| || || |||||| ||| ||| | | | Sbjct 106876822 AGTGCCAGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCATCTTTGAGACATCATGTG 106876763 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || | ||||| || || || || | ||||||||| || || || | |||||| Sbjct 106876762 ATAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATTAA 106876703 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||||||||| ||||| | | ||| | | |||||| | || || | |||| Sbjct 106876702 CATGTGCTGAGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGATAAGACCTCTCCAG 106876643 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||||| || ||||| || | || |||||| || || || || || Sbjct 106876642 GGTTTTGAAGCCAAAGTAATCATAGTCAAAGTCACGATCATATATGAT 106876595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622359924314040