Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq3 109 5e-19 seq10 96.9 3e-15 seq9 96.9 3e-15 seq11 95.1 1e-14 seq6 95.1 1e-14 seq4 93.3 4e-14 seq12 89.7 5e-13 seq7 89.7 5e-13 >seq3 Length=102937913 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || ||||| |||| || || | || ||| | || | || || Sbjct 37626047 AATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTCGAGTCTTC 37625988 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | |||||| ||||| ||||||||||| || || || || || Sbjct 37625987 CGACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGCATCCCCCCGGACCA 37625928 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 |||| | ||||| | || ||| || ||||||||||||| | | | | |||||| || Sbjct 37625927 ACAACGCCTCATCTTCGCCGGTAAGCAACTCGAAGATGGCCGCACCCTAGCCGACTACAA 37625868 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| ||||| ||||| ||| |||| || || || Sbjct 37625867 CATCCAAAAGGAATCCACTCTCCACCTTGTTCT 37625835 >seq10 Length=114683840 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||||||||| | ||||| || | |||||| | || | || | Sbjct 38471936 ATGCAGATCTTTGTAAAAACCCTTACTGGTAAGACCATCACCCTTGAGGTGGAGAGCTCC 38471995 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || ||||| | ||||| ||||| ||||| |||||||| || || ||||| Sbjct 38471996 GATACTATCGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCACCAGATCAG 38472055 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATA-GAAACGT-CAGCGACTATA 26946 || || | |||| | ||| |||||||||||||||| || || || | || || || | Sbjct 38472056 CAGAGGTTGATTTTTGCCGGAAAACAACTCGAAGATGGTAGGACACTTGCA--GATTACA 38472113 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||| || ||||| ||||| |||| || ||||| | ||||| || || Sbjct 38472114 ACATCCAGAAAGAGTCTACCCTCCACCTTGTCCTTCGTCTTAGGGGTGG 38472162 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | ||||| ||| | |||||| | || | ||| | Sbjct 38459540 ATGCAGATCTTTGTGAAAACCCTTACTGGTAAAACCATCACCCTTGAGGTGGAAAGCTCC 38459599 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | ||||| || || ||||||||||| || ||||| || ||| Sbjct 38459600 GATACTATTGATAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAA 38459659 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || |||| | ||| ||||||||||| |||| ||| | |||||| ||| Sbjct 38459660 CAGAGGCTTATTTTTGCCGGAAAACAACTCGAGGATGGCCGAACTCTTGCCGACTACAAC 38459719 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || || || |||| || ||||| Sbjct 38459720 ATCCAAAAGGAGTCCACCCTCCACCTAGTCCT 38459751 >seq9 Length=96604005 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| ||||| | || || ||||| |||| || ||| | || ||| | || | || || Sbjct 73174368 CAAGATGCAGATCTTCGTCAAAACCCTAACGGGGAAAACCATAACCCTTGAGGTCGAGTC 73174427 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 |||||||||||| | |||||| ||||| ||||| ||||| || |||||||| Sbjct 73174428 TTCCGACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGCATCCCTCCCGA 73174487 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||||||| | || || | || ||| || || || ||||| | | | | | |||||| Sbjct 73174488 TCAACAACGCCTTATCTTCGCCGGGAAGCAGCTTGAAGACGGCCGCACCTTAGCCGACTA 73174547 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || ||||| ||| | || || ||||| Sbjct 73174548 CAATATCCAGAAGGAATCCACTCTTCACCTCGTCCT 73174583 >seq11 Length=105699404 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| ||||| || || | |||||| ||||| | || | Sbjct 76982576 ATGCAAATCTTTGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGAGAGTTCC 76982635 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || |||||| ||||| ||||| || || || || ||| Sbjct 76982636 GACACCATCGACAACGTTAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCTGACCAA 76982695 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | || | || ||||||||| | ||||||| || | | | || ||||| Sbjct 76982696 CAGCGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGAGGACCTTGGCTGATTATAAT 76982755 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| ||||| || | || || || |||| ||| | ||||| Sbjct 76982756 ATCCAAAAGGAATCCACCCTTCACCTTGTTTTGAGGCTTCGTGGAGG 76982802 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 26763 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA 26822 || || ||||| | ||||| ||||| | || || || | || || |||| | ||| Sbjct 76982342 AAGAAGATGCAGATCTTTGTGAAAACCCTTACCGGCAAGACCATAACACTCGAGGTCGAA 76982401 Query 26823 TCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCC 26882 |||||||||||| | ||||| ||||| ||||| |||||||| || ||| Sbjct 76982402 AGCTCCGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCC 76982461 Query 26883 GATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGAC 26942 || || || | ||||||| || |||||||| |||||||| | | | | | | || Sbjct 76982462 GACCAGCAGCGTCTCATTTTCGCTGGCAAACAGCTCGAAGACGGTCGGACCCTTGCTGAT 76982521 Query 26943 TATAACATTCAAAAAGAATCTACTATCCATCTGGTC 26978 |||||||| || |||||||| || |||| || ||| Sbjct 76982522 TATAACATCCAGAAAGAATCCACCCTCCACCTCGTC 76982557 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || || || ||| | |||||| | || | ||| | Sbjct 76982804 ATGCAGATTTTTGTCAAGACTTTGACAGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 76982863 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| || | || || ||||||| || || ||||| || || || ||||| Sbjct 76982864 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 76982923 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 ||||| ||||| | | |||||||||| | ||||||| || | | | || || ||||| Sbjct 76982924 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGA-CTTTGGCTGATTATAA 76982982 Query 26948 CATTCAAAAAGAATCTAC 26965 |||||| ||||| ||||| Sbjct 76982983 CATTCAGAAAGAGTCTAC 76983000 >seq6 Length=121339338 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || |||||| | || || ||||| |||| || || | || ||| | || | || || Sbjct 51785892 AAGATGCAAATCTTCGTCAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTTGAGTCT 51785833 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | |||||| ||||| ||||| ||||| || || ||||| Sbjct 51785832 TCCGACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGCATCCCACCCGAC 51785773 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 ||||| | ||||| | | ||| || || ||||| || | | | | | |||||| Sbjct 51785772 CAACAGCGCCTCATCTTTGCCGGAAAGCAGCTCGAGGACGGCCGCACCTTAGCCGACTAC 51785713 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || ||||| || ||||||| || || | ||||| ||||| Sbjct 51785712 AACATCCAGAAGGAATCCACCCTCCATCTCGTGCTCCGTCTTAGGGGAGG 51785663 >seq4 Length=137675496 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| ||||| | || || ||||| | || || || | || ||| | || | || || Sbjct 135762991 CAAGATGCAGATCTTCGTCAAAACCCTGACGGGGAAGACTATAACCCTAGAGGTCGAGTC 135762932 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 |||||||| || | |||||| ||||| ||||| ||||| || || || || Sbjct 135762931 TTCGGACACCATTGACAATGTCAAAGCTAAGATCCAAGACAAGGAAGGCATTCCACCTGA 135762872 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 |||||| | || || | || |||||| ||||||||||||| | | | | |||||| Sbjct 135762871 CCAACAACGTCTTATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACCTTAGCCGACTA 135762812 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || ||||| ||| | || || ||||| | || || ||||| Sbjct 135762811 CAACATCCAGAAGGAATCCACTCTACACCTTGTCCTCCGTCTCAGGGGAGG 135762761 >seq12 Length=146008498 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| ||||| || || | |||||| ||||| | || | Sbjct 24218988 ATGCAGATCTTCGTCAAAACCTTAACCGGTAAGACCATCACCCTCGAAGTCGAGAGCTCC 24219047 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| || || ||||| ||||| || || || || || Sbjct 24219048 GACACCATCGACAATGTCAAGTCTAAAATCCAAGACAAGGAAGGCATCCCACCAGACCAG 24219107 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || ||||||||| |||||||||| | | | | ||| ||||| Sbjct 24219108 CAGCGTCTCATCTTCGCCGGCAAACAGCTCGAAGATGGCCGTACCTTGGCCGATTATAAT 24219167 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || ||||| || |||| || ||||| Sbjct 24219168 ATCCAGAAGGAATCCACCCTCCACCTCGTCCT 24219199 >seq7 Length=127721098 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| | ||||| || | |||||| | ||| | ||| | Sbjct 44510182 ATGCAAATATTTGTCAAAACTCTTACTGGCAAGACAATCACCCTTGAAGTGGAAAGCTCC 44510123 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | ||||| ||||| ||||||||||| || ||||| || ||| Sbjct 44510122 GACACAATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCTCCTGACCAA 44510063 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | || |||||| | || |||| | | | | ||||| ||| Sbjct 44510062 CAGAGGCTTATCTTTGCTGGAAAACAATTGGAGGATGGCCGCACCCTTGCTGACTACAAC 44510003 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||| ||||| |||| || ||||| | ||||| || || Sbjct 44510002 ATCCAGAAAGAGTCTACCCTCCACCTTGTCCTTCGTCTTAGGGGTGG 44509956 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| | |||||||| | || ||| | || | || Sbjct 86220160 ATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACAATTACCTTGGAGGTGGAGAGTTCG 86220219 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| || | || ||| |||||| ||||||||||| || || || || ||| Sbjct 86220220 GATACCATTGATAATGTGAAAGCCAAGATTCAGGACAAAGAAGGAATCCCACCAGACCAA 86220279 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | |||| | || |||||||| ||||||| || | | ||| ||||| Sbjct 86220280 CAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTGCCGATTATAAT 86220339 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || |||||| ||||| |||| || Sbjct 86220340 ATCCAGAAGGAGTCTACTCTCCATTTGGTTCT 86220371 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| | ||||| || | |||||| | || | ||| | Sbjct 44510410 ATGCAGATCTTCGTGAAAACCCTCACTGGCAAGACAATCACCCTTGAGGTTGAAAGCTCC 44510351 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | ||||| ||||| || || |||||||| ||||| || ||| Sbjct 44510350 GACACAATTGATAATGTCAAGGCTAAGATCCAGGATAAGGAAGGGATCCCTCCTGACCAA 44510291 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | ||| || ||||| ||||||| | | | | | ||||| ||| Sbjct 44510290 CAGAGGCTTATCTTTGCCGGTAAGCAACTGGAAGATGGTCGCACCCTTGCTGACTACAAC 44510231 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||||||||| ||||| |||| || || || Sbjct 44510230 ATTCAAAAAGAGTCTACCCTCCACCTTGTGCT 44510199 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||||||||| | ||||| || | |||||| |||| | ||| | Sbjct 44510638 ATGCAGATCTTTGTAAAAACTCTTACTGGTAAGACCATCACCCTCGAGGTGGAAAGCTCC 44510579 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | ||||| ||||| ||||| |||||||| || || || ||| Sbjct 44510578 GACACAATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCCCCTGACCAA 44510519 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | || || ||||| || || |||| | | | | ||||| ||| Sbjct 44510518 CAGAGGCTTATCTTCGCTGGGAAACAGCTAGAGGATGGCCGTACCCTTGCTGACTACAAC 44510459 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || || || ||||||| ||||| Sbjct 44510458 ATCCAAAAGGAGTCCACCCTCCATCTTGTCCT 44510427 Score = 84.2 bits (92), Expect = 2e-11 Identities = 170/247 (69%), Gaps = 8/247 (3%) Strand=Plus/Plus Query 26752 CTTTTTAGTCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCA 26811 ||||| | |||| | |||||| | ||||| ||||| | ||||| || | |||||| Sbjct 86219689 CTTTTGATTCAAT--AGATGCAAATCTTTGTTAAAACCCTCACTGGCAAGACCATCACCC 86219746 Query 26812 TCGAATT--AGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGA 26869 |||| | ||| | | |||||||| || | || || ||||| || || || Sbjct 86219747 TCGAGGTGGAGAGTTCA--GACACCATTGATAATGTGAAGGCTAAGATCCAAGATAAGGA 86219804 Query 26870 AGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 26929 |||||| || || ||||| || || || || | | ||||||||||| || |||| | Sbjct 86219805 AGGGATCCCACCGGATCAGCAGAGGCTTATCTTTGCTGGCAAACAACTTGAGGATGGCCG 86219864 Query 26930 AAACGTCAG-CGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTA 26988 ||| || |||||| |||||||| |||||||| || | || |||| || ||||| Sbjct 86219865 -CACGCTAGCCGACTACAACATTCAGAAAGAATCCACCCTTCACTTGGTTCTTCGACTTC 86219923 Query 26989 GAGGAGG 26995 | || || Sbjct 86219924 GTGGCGG 86219930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478211147005680