Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 3e-14 seq7 93.3 1e-13 seq9 91.5 4e-13 >seq1 Length=147124936 Score = 95.1 bits (104), Expect = 3e-14 Identities = 180/259 (69%), Gaps = 7/259 (3%) Strand=Plus/Minus Query 22763 TTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAA 22822 |||| || |||| || | |||||| ||| ||| | || ||||| ||||| | ||| Sbjct 98687158 TTGGGATGAATGGTGAGTTGATGAGTCAATACATTGAGTTCGTTGCGGATCGGTTGTTAG 98687099 Query 22823 TTTCACTCGGTTATG-CAAAGCAT-TATAACGTCGTTAATCCATTTGAATGGATGGAACT 22880 | | || |||| |||| || || || | | ||| || ||||| ||||||||||| Sbjct 98687098 GAGCTTTAGGGTATGGCAAA--ATGTACAATGCGGCTAACCCTTTTGATTGGATGGAACT 98687041 Query 22881 TATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940 |||||| | |||| || |||||||||||||| || |||||||| || || || || || Sbjct 98687040 AATTTCATTGCAAGGGAAAACCAATTTCTTCGAGAAGAGAGTTGGAGAGTATCAGAAGGC 98686981 Query 22941 AGGTGTTATGGATGCATTGAATGATAGT-TCAAAA--CACGGATTTACATTAGATGAAGA 22997 || || ||| ||||||| | | ||| | || | ||| | | | ||||| || Sbjct 98686980 AGCGGTCATGTCGAGTTTGAATGGGAATGGCAAGACCCATGAATTCAAAATGGATGAGGA 98686921 Query 22998 ATTTTAATTATTTGTATTT 23016 ||||| ||||| | ||| Sbjct 98686920 CTTTTAGGTATTTCTTTTT 98686902 >seq7 Length=127721098 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 111696 ATGTGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCT 111755 |||| ||||| |||||| | ||| | | | || ||||||||||||||||| |||||| Sbjct 39037851 ATGTTGCAGTTCTATGTAGCCAACGAGGAGTTATCTTGCCAAATGTATCAGCGCTCTGCT 39037792 Query 111756 GATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATC 111815 ||||| || | ||||| || ||||| |||||| ||| || || || || ||| | || Sbjct 39037791 GATATGGGCTTGGGTGTGCCATTTAACATTGCATCTTATGCTCTCCTGACATGCATGATT 39037732 Query 111816 GCTCATTTT 111824 |||||| || Sbjct 39037731 GCTCATGTT 39037723 >seq9 Length=96604005 Score = 91.5 bits (100), Expect = 4e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 22763 TTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAA 22822 |||| || || | ||| | ||||||| || || | || || || ||||| | || Sbjct 49336507 TTGGGATGAACGGCGAGTTAATGAGTCAGTACATCGAGTTCGTAGCGGATCGGTTGTTGG 49336566 Query 22823 TTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTA 22882 | | || || | |||| || ||||| || || |||||||| ||||||||||| | Sbjct 49336567 GAGCGTTAGGGTACGGAAAGATGTACAACGTGGTCAACCCATTTGATTGGATGGAACTGA 49336626 Query 22883 TTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940 | || | |||| || |||||||||||||| ||||||||||| || || ||||| || Sbjct 49336627 TATCGTTGCAAGGGAAAACCAATTTCTTCGAGAAAAGAGTTGGAGAGTATCAAAAGGC 49336684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302094161677658