Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq11 111 1e-19 seq7 102 7e-17 seq2 95.1 1e-14 seq12 93.3 4e-14 seq10 93.3 4e-14 >seq11 Length=105699404 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||||||||| || | || || ||||| || ||| | || || | | Sbjct 76982804 ATGCAGATTTTTGTCAAGACTTTGACAGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 76982863 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| |||| || || ||| ||| ||||| ||||| |||| |||||| Sbjct 76982864 GATACCATTG-ACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCA 76982922 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| || || | ||| ||||||||||| ||||||| | || |||| |||||||| Sbjct 76982923 GCAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAA 76982982 Query 115465 CATTCAAAAAGAGTCTAC 115482 |||||| ||||||||||| Sbjct 76982983 CATTCAGAAAGAGTCTAC 76983000 Score = 82.4 bits (90), Expect = 6e-11 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CG-GAGTCCA 115343 |||||||| ||||||||||| | || || || ||||| ||| ||||| || |||| | Sbjct 76982576 ATGCAAATCTTTGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGAGAGTTC- 76982634 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 |||||| | | |||| || || || ||| || || ||||| |||| ||| Sbjct 76982635 -CGACACCATCG-ACAACGTTAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCTGAC 76982692 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 || || | | || | || ||||||||||| ||||||| | ||| |||| |||||| Sbjct 76982693 CAACAGCGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGAGGACCTTGGCTGATTAT 76982752 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || ||||| || || || | || | || ||||| | || ||||| Sbjct 76982753 AATATCCAAAAGGAATCCACCCTTCACCTTGTTTTGAGGCTTCGTGGAGG 76982802 >seq7 Length=127721098 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||||||||| ||||| ||||| || |||||| | || |||| Sbjct 86220160 ATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACAATTACCTTGGAGGTGGAGAGTTCG 86220219 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | || ||| || ||| || |||||||| |||| || || Sbjct 86220220 GATACCATTGATAATGTGAAAGCCAAGATTCAGGACAAAGAAGGAATCCCACCAGACCAA 86220279 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||| | |||| ||| || |||||| | ||||||| | || | ||||||||||| Sbjct 86220280 CAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTGCCGATTATAAT 86220339 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGT 115494 || || || ||||||||| | ||| |||| Sbjct 86220340 ATCCAGAAGGAGTCTACTCTCCATTTGGT 86220368 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| ||||||||||| ||||||||||| || | || |||| Sbjct 44509954 ATGCAGATCTTTGTAAAAACGCTCACTGGAAAAACCATCACTTTAGAGGTGGAGAGTTCT 44509895 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | || || || ||| || || || ||| |||| || ||| Sbjct 44509894 GATACAATTGATAACGTTAAGTCCAAGATTCAGGACAAGGAGGGCATCCCACCAGACCAG 44509835 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || | |||| ||| || |||||| | ||||||| || |||| | || || |||||| Sbjct 44509834 CAGAGGTTAATTTTTGCTGGGAAACAACTTGAAGATGGCAGAACCCTTGCAGACTATAAC 44509775 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||||||| || ||||| | ||| |||||||| Sbjct 44509774 ATTCAAAAGGAATCTACCCTCCATTTGGTGTTG 44509742 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||||||||| || || || || || || ||| | ||| ||| | | Sbjct 44510182 ATGCAAATATTTGTCAAAACTCTTACTGGCAAGACAATCACCCTTGAAGTGGAAAGCTCC 44510123 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || || || || |||||||| |||| ||| || Sbjct 44510122 GACACAATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCTCCTGACCAA 44510063 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || ||||| | ||| || |||||||| || |||| | ||| | || || || ||| Sbjct 44510062 CAGAGGCTTATCTTTGCTGGAAAACAATTGGAGGATGGCCGCACCCTTGCTGACTACAAC 44510003 Query 115466 ATTCAAAAAGAGTCTAC 115482 || || ||||||||||| Sbjct 44510002 ATCCAGAAAGAGTCTAC 44509986 >seq2 Length=101023042 Score = 95.1 bits (104), Expect = 1e-14 Identities = 119/158 (75%), Gaps = 8/158 (5%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||||||||| ||||| ||||| ||||||||| |||| |||| | | Sbjct 44353547 ATGCAAATCTTTGTCAAAACTCTCACAGGAAAGACCATTACCCTCGAGGTGGAGACTTTC 44353606 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| || ||||| || ||| | || || || | | |||| |||| |||||| Sbjct 44353607 GACACCATT-GACAATGTGAAAGACAAGAT--CC--AAGACAAGGGATCCC--ATGATCA 44353659 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATG 115442 |||||| ||||||| ||| || || ||| | ||||||| Sbjct 44353660 GCAAAGGCTTATTTTTGCTGGAAAGCAACTCGAAGATG 44353697 >seq12 Length=146008498 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 |||||||| ||| |||| ||||||||| || | |||| ||| || || ||| ||||| Sbjct 139205687 GATAAAGAGGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTAGAA 139205628 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| | |||| | || ||||||||||| ||||| ||||| ||| | || | || || Sbjct 139205627 GATGGCCGAACCCTAGCTGATTATAACATCCAAAAGGAGTCCACTCTTCACCTAGTTTTA 139205568 Query 115499 AGATTGCGAGGAGGAA 115514 || | ||||||||| Sbjct 139205567 AGGCTTAGAGGAGGAA 139205552 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 |||||||||||| |||| ||||||||| || | |||| ||| || || ||| | ||| Sbjct 139210907 GATAAAGAAGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTGGAA 139210848 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACT 115483 |||| | |||| | || ||||||||||| ||||| ||||| ||| Sbjct 139210847 GATGGCCGAACCCTAGCTGATTATAACATCCAAAAGGAGTCCACT 139210803 >seq10 Length=114683840 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| || || ||||| ||||| || ||||| | ||| ||| Sbjct 38466680 ATGCAAATTTTTGTGAAGACTCTCACCGGAAAGACTATTACTTTGGAAGTTGAGAGTTCT 38466739 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| |||||| || || || || ||||| | || ||||| Sbjct 38466740 GACACCATTG-ACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCA 38466798 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | |||| ||| |||||||| | ||||||| | || | || |||||||| Sbjct 38466799 GCAGAGGTTGATTTTTGCTGGCAAACAGCTCGAAGATGGTAGGACACTTGCAGATTATAA 38466858 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 || || ||||||||||| | || ||||| | || |||| || |||| Sbjct 38466859 TATCCAGAAAGAGTCTACCCTTCACTTGGTGCTCCGACTGCGTGGTGGAA 38466908 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| || || ||||| ||||| || ||||| | ||| ||| Sbjct 38472392 ATGCAAATTTTTGTGAAGACTCTCACCGGAAAGACTATTACTTTGGAAGTTGAGAGTTCT 38472451 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| |||||| || || || || ||||| | || ||||| Sbjct 38472452 GACACCATTG-ACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCA 38472510 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | |||| ||| |||||||| | ||||||| | || | || |||||||| Sbjct 38472511 GCAGAGGTTGATTTTTGCTGGCAAACAGCTCGAAGATGGTAGGACACTTGCAGATTATAA 38472570 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 || || ||||||||||| | || ||||| | || |||| || |||| Sbjct 38472571 TATCCAGAAAGAGTCTACCCTTCACTTGGTGCTCCGACTGCGTGGTGGAA 38472620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424953036954280