Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq9 178 1e-39 seq1 168 7e-37 seq12 91.5 2e-13 seq4 91.5 2e-13 seq7 89.7 6e-13 seq6 89.7 6e-13 seq8 87.8 2e-12 seq5 86.0 7e-12 seq3 84.2 2e-11 seq11 82.4 8e-11 >seq9 Length=96604005 Score = 178 bits (196), Expect = 1e-39 Identities = 395/591 (67%), Gaps = 9/591 (2%) Strand=Plus/Minus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 ||||| ||||| || || || || | |||||| |||||||| || ||||| || Sbjct 49336400 GTACAGCAAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGA 49336341 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201 ||| ||||| || || | | || | || || | ||||||||| | | ||||| || Sbjct 49336340 GAAAGTTAATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCC 49336281 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 || ||||| || || || ||| ||||| || | | |||||||| ||| || | Sbjct 49336280 GGAGAAAAAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCC 49336221 Query 93262 ATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTC 93321 | | ||||||||| | |||||| ||||||||||| | ||| || | || || Sbjct 49336220 G---CCGTCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTC 49336164 Query 93322 GATAGCGTTAAATAG---GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 ||| ||| || || || | | ||||| |||||| |||||| || |||| | Sbjct 49336163 GATGGCGCGGAAAAGACGGTTCTTT---TCGTCGGAATCTTTTATGTAAGTCTCGAGAAG 49336107 Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438 ||| ||||| || || |||| ||| || || || |||||||| || || ||| | Sbjct 49336106 GAGACTGTACATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACG 49336047 Query 93439 AGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACC 93498 || || | ||| || || |||| || | | | || || ||| |||||| || Sbjct 49336046 CGCCTCGGAGATTTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCC 49335987 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558 |||||| || |||||||| || | | || | || || || | ||| ||| | | || Sbjct 49335986 ATCGGAGGCGGCAAAAAAGGCGAGAACGTGACTAATGAAGTGGTGCTCGTCAGCGGTGAG 49335927 Query 93559 CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGC 93618 ||||| | ||| | || ||||||||||| || | ||||||||||| || Sbjct 49335926 AGCTTCCCAGTGACGAAGAACGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGC 49335867 Query 93619 TTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 ||| ||||| |||||||| ||||||| ||| | ||||| || || || || Sbjct 49335866 TTCGGCTTTCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGGAACAT 49335816 >seq1 Length=147124936 Score = 168 bits (186), Expect = 7e-37 Identities = 304/441 (69%), Gaps = 9/441 (2%) Strand=Plus/Plus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 ||||| ||||| ||||||||| ||| | |||||| ||||| || |||||||| || Sbjct 98687265 GTACAGCAAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGA 98687324 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTAC 93200 ||| ||||| || || | | || || || || | ||||||||| | ||| ||||| | Sbjct 98687325 GAAAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGC-GCAGAAACTGC 98687383 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA--TTTGC 93258 | || |||||||| ||||| ||| || || || | | |||||||||||| || || Sbjct 98687384 CGGAGAAAAATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGC 98687443 Query 93259 GGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318 | | | ||||||||| |||||||||||||||||||| | || || | || Sbjct 98687444 CG-----CCGTCGATCCATTTGAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGT 98687498 Query 93319 TTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 ||| |||||| || ||| | | ||| | |||| || || || |||| | Sbjct 98687499 TTCAGTAGCGTGGAAGAGGCGGTTTTTTTCGGTGGCATCTTTGATATAAGTTTCGAGGAG 98687558 Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438 ||| |||||| ||||| |||| |||||| || || ||||||||||| || || | Sbjct 98687559 GAGACTATACATCTCAGAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAACGCACG 98687618 Query 93439 AGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACC 93498 || || | ||| || || |||| || | | |||||||||| ||| || || Sbjct 98687619 CGCCTCTGCGATTTGGACCTCTTTCATGAAGCGAACGGCGAGATTTTCGAGGACGATGCC 98687678 Query 93499 ATCGGATGCTGCaaaaaaaGC 93519 ||||||||| || || || || Sbjct 98687679 ATCGGATGCGGCGAAGAAGGC 98687699 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 48696736 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 48696793 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 48696794 CGTGGGTTCAAATCCCACTTCTGACA 48696819 >seq12 Length=146008498 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/84 (85%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||||| | | | ||||| Sbjct 90153673 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTTAGAGAGCG 90153614 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 90153613 TGGGTTCAAATCCCACTTCTGACA 90153590 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||||| | | | ||||| Sbjct 90153248 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTTAGAGAGCG 90153189 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| || ||| Sbjct 90153188 TGGGTTCAAATCCCACTTCTAACA 90153165 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 12683223 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 12683166 Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351 |||||| || |||||| ||| ||| || Sbjct 12683165 GGGTTCAAATCCCACAGCTGTCAATTT 12683139 >seq4 Length=137675496 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/97 (81%), Gaps = 6/97 (6%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--- 126320 |||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 133772129 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAG 133772072 Query 126321 -GCGTGGGTTCGAACCCCACACCTGACAAATTATTAT 126356 |||||||||| || ||||| |||||| |||| || Sbjct 133772071 GGCGTGGGTTCAAATCCCACTTCTGACATTTTATAAT 133772035 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--- 126320 |||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 133768315 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAG 133768258 Query 126321 -GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 133768257 GGCGTGGGTTCAAATCCCACTTCTGACA 133768230 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/94 (81%), Gaps = 6/94 (6%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--- 126320 |||||||| ||||||||||||||||||||||||| | ||| |||| | ||||| || Sbjct 133768738 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGAT--CCTCGTGAGAG 133768681 Query 126321 -GCGTGGGTTCGAACCCCACACCTGACAAATTAT 126353 |||||||||| || ||||| |||||| |||| Sbjct 133768680 GGCGTGGGTTCAAATCCCACTTCTGACATTTTAT 133768647 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTG--GTTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||| |||| | | ||| Sbjct 117619892 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTGTTCATGAGAGGGCG 117619833 Query 126324 TGGGTTCGAACCCCACACCTGACAAATT 126351 ||||||| || ||||| |||||||||| Sbjct 117619832 TGGGTTCAAATCCCACTTCTGACAAATT 117619805 >seq7 Length=127721098 Score = 89.7 bits (98), Expect = 6e-13 Identities = 77/94 (82%), Gaps = 6/94 (6%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 39140331 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 39140388 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||| || ||||| |||||| ||||| Sbjct 39140389 GCGTGGGTTCAAATCCCACTTCTGACATTTTATT 39140422 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||||| | | ||||| Sbjct 93215160 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTAAGAGAGCG 93215101 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 93215100 TGGGTTCAAATCCCACTTCTGACA 93215077 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/96 (80%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 112444519 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 112444576 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATT 126363 ||| || |||||| ||| || || ||||| |||| Sbjct 112444577 TTCAAATCCCACAGCTGTCATGTTTTTATTTAAATT 112444612 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/95 (80%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 126259 ATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTC 126316 ||| || |||||| ||||||||||||||||||||||||| | ||| ||||| ||| Sbjct 110817022 ATTAACTGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAA 110816963 Query 126317 GGGAGCGTGGGTTCGAACCCCACACCTGACAAATT 126351 | | |||||||||| || ||||| ||||||| || Sbjct 110816962 GAGGGCGTGGGTTCAAATCCCACTTCTGACAATTT 110816928 >seq6 Length=121339338 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/106 (80%), Gaps = 7/106 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 18978054 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 18977997 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||||| || ||||| |||||| || || || ||||||| Sbjct 18977996 GCGTGGGTTCAAATCCCACTTCTGACATTTTGTT-TTCTAATTTTT 18977952 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/106 (80%), Gaps = 7/106 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 18998026 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 18997969 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||||| || ||||| |||||| || || || ||||||| Sbjct 18997968 GCGTGGGTTCAAATCCCACTTCTGACATTTTGTT-TTCTAATTTTT 18997924 >seq8 Length=127390875 Score = 87.8 bits (96), Expect = 2e-12 Identities = 76/93 (82%), Gaps = 6/93 (6%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-- 126320 ||||||||| ||||||||||||||||| |||||| | ||| |||||| ||||| || Sbjct 115622724 ACAGTCAGGATGGCCGAGTGGTCTAAGACGCCAGGCTCAAGTTCTGGT--CCTCGTGAGA 115622781 Query 126321 --GCGTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||| || ||||| |||||||||| Sbjct 115622782 GGGCGTGGGTTCAAATCCCACTTCTGACAAATT 115622814 >seq5 Length=59691364 Score = 86.0 bits (94), Expect = 7e-12 Identities = 75/91 (82%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 56206875 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 56206932 Query 126328 TTCGAACCCCACACCTGACAAA-TTATTATT 126357 ||| || |||||| ||| |||| || ||||| Sbjct 56206933 TTCAAATCCCACAGCTGTCAAAGTTTTTATT 56206963 >seq3 Length=102937913 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 94207232 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 94207175 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 94207174 CGTGGGTTCAAATCCCACTTCTGACA 94207149 >seq11 Length=105699404 Score = 82.4 bits (90), Expect = 8e-11 Identities = 82/104 (79%), Gaps = 7/104 (7%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 93424205 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 93424262 Query 126328 TTCGAACCCCACACCTGACAAATT---ATTATTGGAATTTTTGT 126368 ||| || |||||| ||| || || |||||| |||||| || Sbjct 93424263 TTCAAATCCCACAGCTGTCAGTTTTTAATTATT--AATTTTAGT 93424304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556335826441560