Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq10 87.8 1e-12 seq12 86.0 4e-12 >seq10 Length=114683840 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | ||||| | |||||||| ||||| ||| | || |||| | Sbjct 38459768 ATGCAGATATTTGTGAAAACCCTTACGGGCAAGACCATCACCCTCGAGGTGGAAAGTTCT 38459827 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | ||| || || || || || || | ||| | ||||| Sbjct 38459828 GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCTCCAGACCAA 38459887 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| ||||||||||| || |||||||| |||||| ||| | || |||||||| Sbjct 38459888 CAGAGGCTTATCTTTGCAGGTAAACAACTTGAAGATGGCCGAACCCTCGCTGATTACAAC 38459947 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || ||||| || ||||| || || Sbjct 38459948 ATCCAGAAAGAGTCTACCCTCCA 38459970 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| ||||| | || || || || || |||||||| ||| |||| ||| | | Sbjct 38460679 AATGCAGATATTCGTGAAGACCTTGACTGGGAAAACCATCACCCTGGAGGTGGAGAGCTC 38460738 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || ||| | | | || | || || ||| || || ||||| | ||| |||| Sbjct 38460739 GGACACGATTGACAATGTGAAATCTAAGATTCAGGACAAGGAGGGGATTCCTCCGGACCA 38460798 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| | ||||||||||| || || | || ||| |||| | || || ||||| Sbjct 38460799 GCAGAGGTTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGAACTTTAGCAGACTACAA 38460858 Query 22013 TATTCAGAAGGAATCTACTCTTCAT 22037 ||||||||||||||| ||||| ||| Sbjct 38460859 TATTCAGAAGGAATCCACTCTGCAT 38460883 >seq12 Length=146008498 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || || || || |||||||| || |||| ||| | Sbjct 12766685 ATGCAGATTTTCGTCAAGACGTTGACTGGGAAAACCATAACTTTGGAGGTGGAGAGTTCC 12766626 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | || ||||| || ||| || ||||| || | || | | || Sbjct 12766625 GATACGATCGACAATGTTAAGGCGAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAG 12766566 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | || || ||||| |||||| | |||||| || ||| |||| ||||||||| Sbjct 12766565 CAAAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 12766506 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| ||||| || | || || ||| | || || || Sbjct 12766505 ATTCAGAAGGAATCCACTCTCCACCTTGTCTTGCGTCTTCGTGGTGG 12766459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357795622763326