Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq9 150 3e-31 seq1 116 7e-21 >seq9 Length=96604005 Score = 150 bits (166), Expect = 3e-31 Identities = 398/601 (66%), Gaps = 10/601 (2%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||| || |||||||| || ||||||||| ||||||||| || |||||||| Sbjct 49335963 CTCGCCTTTTTTGCCGCCTCCGATGGCATAGTCCTTGAGAACCTTGCTGTTCGGTTCATG 49336022 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAA 42541 |||||||| || || |||||||| ||| || || || ||||| || || || || || Sbjct 49336023 AAAGAGGTCCAAATCTCCGAGGCGCG-TGCTTTTTATGGTTTCCAAATCGCTATCGAAAA 49336081 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | ||||| ||| ||||| || ||| | || ||||| ||| ||| ||| Sbjct 49336082 TATCCACTCCGAGATGTACAGTCTCCTTCTCGAGACTTACATAAAAGATTCCGACGAAAA 49336141 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 ||| | || ||| ||||| |||||| |||| || | || || || || ||||| Sbjct 49336142 GAACCGTCTTTTCCGCGCCATCGAGACGGTGCCGTGTGTGGCTAAAAAAGCCGAGTGGGC 49336201 Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | || |||||||| | || | ||| |||| ||| || | | || ||| | Sbjct 49336202 TATGAAATGGATCGACGG---CGGAGAAACTTTCGCCGAACGGTTAATCGCTTTTGCTTG 49336258 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 ||| ||||| ||||| ||||| || ||| |||| || ||| | || ||| || Sbjct 49336259 CGTAGAGGGGATCTTTTTCTCCGGAAGTTTCTGTGCCATATTTTGGTTAAAAAAGAGGGG 49336318 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 || ||||||||| | || ||||| ||||| | ||| | || || || || || | Sbjct 49336319 GTTAATGCCCGGATTAACTTTCTCAAACGAGTTAATCTCACGAGATGAAGGTCTCCACTG 49336378 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGT 42901 || || || ||| | |||| ||| | ||||||| |||| | || || || Sbjct 49336379 TGATTTCGCTTGCTTGCTGTACTC---TCTCCTCAGGTCAAAGCTGAGTGAAGAACGCGT 49336435 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC-AGTCGCTGC 42960 | | || | | ||| || ||||| || |||| ||||||| | | || | | |||| Sbjct 49336436 GAGAGGGATAGTAAGGGACGCGGTGGACATAGAGAGGGAGTTCGT-ATGCGATGCTCTGC 49336494 Query 42961 CCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020 || | |||| || |||||| ||| | ||| | |||||||| ||| ||| || | Sbjct 49336495 CCTGCGCGTTGGTTGGGATGAACGGCGAGTTAATGAGTCAGTACATCGAGTTCGTAGCGG 49336554 Query 43021 A 43021 | Sbjct 49336555 A 49336555 >seq1 Length=147124936 Score = 116 bits (128), Expect = 7e-21 Identities = 294/444 (66%), Gaps = 5/444 (1%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || |||||||||||||| || || ||||| ||| || || || ||| | |||||| Sbjct 98687702 CTTGCCTTCTTCGCCGCATCCGATGGCATCGTCCTCGAAAATCTCGCCGTTCGCTTCATG 98687643 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAA 42541 |||||||| || | |||||||| ||| || || || ||||| || ||||| ||||| Sbjct 98687642 AAAGAGGTCCAAATCGCAGAGGCGCG-TGCGTTTTATGGATTCCAAATCGCCATCGAGAA 98687584 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | ||||||||| |||| || ||| | || || ||| ||| || ||| Sbjct 98687583 TATCCACTCTGAGATGTATAGTCTCCTCCTCGAAACTTATATCAAAGATGCCACCGAAAA 98687524 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 ||| | || ||| | || | || ||| |||| ||| | || || || || ||||| Sbjct 98687523 AAACCGCCTCTTCCACGCTACTGAAACGGTGCCGTGCGTGGCTAAAAAAGCCGATTGGGC 98687464 Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 |||| |||||||| | || || | | || | ||| || | | || || | Sbjct 98687463 TTTCAAATGGATCGACGG---CGGCGAAGCTTTTGCCGAACGGTTAATCGCTTTCGCTTG 98687407 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 ||| || ||||| || ||||| ||| ||| | | || || ||| | || || | Sbjct 98687406 CGTAGAAGGCATATTTTTCTCCGGCAGTTTCTGCGCGATATTTTGGTTAAAAAAGCGCGG 98687347 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 || ||||| ||| | || ||||| ||||| | ||| | || || || || ||| | Sbjct 98687346 GTTAATGCCTGGATTAACTTTCTCAAACGAGTTGATCTCTCGAGATGAAGGTCTCCATTG 98687287 Query 42842 GGACTTTGCCTGCCTCCTGTTCTC 42865 |||||||| ||| | |||| ||| Sbjct 98687286 CGACTTTGCTTGCTTGCTGTACTC 98687263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943448936023440