Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq9 86.0 1e-11 >seq9 Length=96604005 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 243531 GGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGG 243590 ||| ||| | ||||| ||| | || ||| | | |||| |||||| || | ||| | Sbjct 49336472 GGAGTTCGTATGCGATGCTCTGCCCTGCGCGTTGGTTGGGATGAACGGCGAGTTAATGAG 49336531 Query 243591 ACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAG-TGT 243649 ||||||||||| |||||||| || || | || ||| | || || | ||||| ||| Sbjct 49336532 TCAGTACATCGAGTTCGTAGCGGATCGGTTGTTGGGAGCGTTAGGGTACG-GAAAGATGT 49336590 Query 243650 ACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACT 243709 ||||| ||||| |||| | ||||| || || ||| | ||||||||||| || | Sbjct 49336591 ACAACGTGGTCAACCCATTTGATTGGATGGAACTGATATCGTTGCAAGGGAAAACCAATT 49336650 Query 243710 TCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 ||||||| || | || | || |||||| Sbjct 49336651 TCTTCGAGAAAAGAGTTGGAGAGTATCAA 49336679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1101814280507650