Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq75419 89.7 5e-13 seq13 89.7 5e-13 seq7 89.7 5e-13 seq6 89.7 5e-13 seq2 84.2 2e-11 >seq75419 Length=160230 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 38878 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 38819 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 38818 CCCGTTCCCGCAAC 38805 >seq13 Length=144148110 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 87764078 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 87764137 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 87764138 CCCGTTCCCGCAAC 87764151 >seq7 Length=127721098 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 98519017 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 98518958 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 98518957 CCCGTTCCCGCAAC 98518944 >seq6 Length=121339338 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 86298783 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 86298842 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 86298843 CCCGTTCCCGCAAC 86298856 >seq2 Length=101023042 Score = 84.2 bits (92), Expect = 2e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 50599444 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 50599385 Query 92675 CCCACTCCC 92683 ||| |||| Sbjct 50599384 CCCGTTCCC 50599376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526101955940880