Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq10 107 1e-18 seq12 102 6e-17 seq11 87.8 1e-12 seq7 87.8 1e-12 >seq10 Length=114683840 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || || | || | |||| || ||||| ||||| ||||| ||| Sbjct 64670772 CCACCACGAAGACGAAGAACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAATCAGCC 64670831 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| | | | || |||| ||||||||| ||||||| || | |||||||| | || Sbjct 64670832 AAAGTCCTTCCGTCTTCCAGTTGTTTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGA 64670891 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| || || ||| | | | | || || | ||| ||||| Sbjct 64670892 ATTCCTTCTTTGTCCTGAATCTTCGCTTTCACGTTATCAATCGTATCCGAGCTCTCCACT 64670951 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||||||| || ||||| || ||||| || |||||||||||||| Sbjct 64670952 TCTAAAGTAATCGTCTTACCGGTCAAAGTCTTGACGAAGATCTGCAT 64670998 >seq12 Length=146008498 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| || | || | |||| ||| || || ||||| ||||| ||| Sbjct 12766459 CCACCACGAAGACGCAAGACAAGGTGGAGAGTGGATTCCTTCTGAATATTGTAATCAGCC 12766518 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| | | |||| |||||||||||||| | ||||| || | |||||||| | || Sbjct 12766519 AAAGTCCTTCCATCTTCCAATTGTTTCCCAGCGAAAATCAACCTTTGCTGATCTGGTGGA 12766578 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||||||||| || || ||| || |||| | || || | || |||| Sbjct 12766579 ATTCCTTCTTTGTCCTGAATCTTCGCCTTAACATTGTCG--ATCGTATCGGAACTCTCCA 12766636 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| || ||||| || || || || || ||||| |||||||| Sbjct 12766637 CCTCCAAAGTTATGGTTTTCCCAGTCAACGTCTTGACGAAAATCTGCAT 12766685 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 39507 CAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATC 39566 || ||||||||| | ||| || || || || || ||||||||||| ||| | || Sbjct 12766701 CAATACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGACCGTC 12766760 Query 39567 GTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC 39626 || | |||||||||| |||| || | | ||||| || | || | |||||| ||||| Sbjct 12766761 CTCGAGTTGTTTCCCGGCAAATATGAGCCTTTGCTGGTCTGGTGGGATGCCTTCCTTGTC 12766820 Query 39627 GCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCACGTCCAAAGTAATTG 39685 || ||| || | ||| | | || |||| | |||||| || |||||||| || | Sbjct 12766821 TTGGATCTTTGCCTTGA-CGTTGTCAATGGTGTCAGAGCTTTCGACTTCCAAAGTTATGG 12766879 Query 39686 TTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | || || || | ||||| ||||||||||||||| Sbjct 12766880 TCTTGCCGGTCAGGGTTTTGACGAAGATCTGCATG 12766914 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || || | || | ||| ||| || || |||||||||||||| Sbjct 24219215 GCCCCCGCGAAGACGGAGGACGAGGTGGAGGGTGGATTCCTTCTGGATATTATAATCGGC 24219156 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| || |||| || | ||||| ||| | || || | ||||||||| || | || Sbjct 24219155 CAAGGTACGGCCATCTTCGAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGTGG 24219096 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | |||||| ||||| ||||| || || |||| | ||||| | ||| || Sbjct 24219095 GATGCCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCG--ATGGTGTCGGAGCTCTCG 24219038 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | || || || ||||| ||||| ||||| |||||||||||||| Sbjct 24219037 ACTTCGAGGGTGATGGTCTTACCGGTTAAGGTTTTGACGAAGATCTGCAT 24218988 >seq11 Length=105699404 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || || |||||||| |||||| | |||| ||||||||||| ||| |||| Sbjct 76982994 TCTTTCTGAATGTTATAATCAGCCAAAGTCCTCCCATCTTCCAATTGTTTGCCGGCAAAG 76982935 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | |||||||| | || | ||||| || || || ||| |||| | Sbjct 76982934 ATGAGCCTTTGCTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTG 76982875 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | || || | |||||| || ||||| || |||||||| || || ||||| || || Sbjct 76982874 TCAATGGTATCGGAGCTTTCAACCTCCAAGGTGATTGTTTTGCCTGTCAAAGTCTTGACA 76982815 Query 39709 AAGATCTGCAT 39719 || |||||||| Sbjct 76982814 AAAATCTGCAT 76982804 >seq7 Length=127721098 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| |||||||| | || ||| ||||| || ||||| || || Sbjct 44509728 CCACCACGAAGACGCAACACCAAATGGAGGGTAGATTCCTTTTGAATGTTATAGTCTGCA 44509787 Query 39553 AAAACGCGTTC----ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 | | |||| ||| || | ||||||||| |||||||||| | |||||| || | Sbjct 44509788 A----GGGTTCTGCCATCTTCAAGTTGTTTCCCAGCAAAAATTAACCTCTGCTGGTCTGG 44509843 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668 || | ||| || ||||| || || |||| | | | ||| || | || || Sbjct 44509844 TGGGATGCCCTCCTTGTCCTGAATCTTGGACTTAACGTTATCAATTGTATCAGAACTCTC 44509903 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||| || ||||| || ||||| || || | |||||||| |||||||||||| Sbjct 44509904 CACCTCTAAAGTGATGGTTTTTCCAGTGAGCGTTTTTACAAAGATCTGCATG 44509955 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || || |||||||| | ||| || || || |||||||||||||| | | | | || Sbjct 86220374 CGGAGAACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCAAGAGTCCTTCCA 86220315 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | |||||| || ||||||| || | || || || | || | ||||||||| Sbjct 86220314 TCTTCAAGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTG 86220255 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || || || ||| | | | | || || | || ||||| ||||| |||||| Sbjct 86220254 TCCTGAATCTTGGCTTTCACATTATCAATGGTATCCGAACTCTCCACCTCCAAGGTAATT 86220195 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || || || | |||||| || ||||| |||||| Sbjct 86220194 GTCTTTCCAGTGAGAGTTTTGACAAAGATTTGCATG 86220159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347050308610427