Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq7 132 6e-26 seq12 93.3 5e-14 seq10 86.0 8e-12 >seq7 Length=127721098 Score = 132 bits (146), Expect = 6e-26 Identities = 254/368 (69%), Gaps = 10/368 (3%) Strand=Plus/Minus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| || ||||| | | | ||| |||||| || ||| | | || ||||| || Sbjct 37441558 ATCAAACCGTCCTGGCCTCAACAAAGCGGAATCAAGAATGTCAGCTCTGTTAGTTGCTGC 37441499 Query 15947 GATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGGTT 16003 || || | ||||| || |||| || ||||||||||| || |||||||||||||| Sbjct 37441498 AATTACGATGATACCGGT---GTTACCCTCGAAACCATCCATTTCGGTCAAAAGCTGGTT 37441442 Query 16004 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 16063 || |||||| || | || |||||| || | ||||| | | ||| ||| || Sbjct 37441441 AAGAGTTTGCTCTCTCTCGTCATTCCCTCCACCAATACCAGTTCCTCTTTGTCGTCCAAC 37441382 Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGA 16122 ||||||||| ||||| | |||||||| || || ||| | | | | ||| ||| | Sbjct 37441381 GGCATCAATTTCATCCACAAAGACGATACAGGGGGCATTCTCCTTGGCCTTCTTGAAA-A 37441323 Query 16123 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 16182 |||| || || || || || |||||||||||||| || ||||| | | | ||| Sbjct 37441322 GATCACGAACTCGAGAAGCACCAACACCAACAAACATTTCAACAAACTCGGAACCTGAA- 37441264 Query 16183 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 16241 || | || ||| || ||| || |||||| ||||| || || ||||||||||| || Sbjct 37441263 ATGGAGAAGAATGGCACACCAGCTTCACCAGCAATTGCCTTAGCAAGAAGAGTCTTTCCG 37441204 Query 16242 GTACCTGG 16249 || || || Sbjct 37441203 GTTCCAGG 37441196 >seq12 Length=146008498 Score = 93.3 bits (102), Expect = 5e-14 Identities = 273/412 (66%), Gaps = 14/412 (3%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 |||||||||||| || ||||| ||||| || | |||||| |||| |||||||||| || Sbjct 60130834 AAAACCATCCATTTCAGTCAACAGCTGATTCAAAGTTTGCTCCCTTTCATCATTCCCT-- 60130777 Query 16034 CATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 16090 |||| |||| | | || |||| || |||||||||||||| ||||| || | Sbjct 60130776 -CCACCAATCCCAGTTCCTCTCTGTCTTCCAACAGCATCAATCTCATCGATGAACACCAA 60130718 Query 16091 GCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACA 16148 ||||| ||| | || | ||| || |||| || || || | || || || Sbjct 60130717 ACATGGGGAATTAGCCTTTGCCTTGTTAAACAGGTCCC-TA-ACTCTGGAAGCTCCAACG 60130660 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 16208 |||||||||||||| | || | || | ||| | ||| || || | ||| Sbjct 60130659 CCAACAAACATCTCGATGAACTCTGAACCAGAAAGGGAAAAGAAAGGAACCCCTGCTTCC 60130600 Query 16209 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 16268 || |||||||| ||| || | |||||||| || ||||| || || || | Sbjct 60130599 CCTGCAATGGCCTTGGCCAGCAATGTCTTACCAGTCCCTGGAGGTCCAATTAGAAGCACT 60130540 Query 16269 CCTCGTGGAATCTTGGCGCCACTTCC--AAAGTATCTCTCAGGTTGCTTAAGAAAATCCA 16326 ||| ||||| |||| ||| || | || | | ||| |||| ||||| || |||| Sbjct 60130539 CCTTTGGGAATTGTGGCACCAATTGCTGCAAATTTTTCTGGGGTT-TTTAAG-AACTCCA 60130482 Query 16327 CAATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 16378 | | ||||| || || | ||||| | ||||| || | |||||| |||| Sbjct 60130481 CTACCTCTTGAAAATCTTGCTTGGCTTCATCAATACCAGCTACATCGTTAAA 60130430 >seq10 Length=114683840 Score = 86.0 bits (94), Expect = 8e-12 Identities = 190/283 (67%), Gaps = 14/283 (5%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| |||| | |||||| || || || || | ||||||||| || Sbjct 19533280 AAATCCATCCATCTCAGTCAGCAACTGGTTGATTGTCTGCTCTCTTTCATCATTTCCT-- 19533223 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | | | ||||| | | || | || || ||||| |||||||| ||||| || ||| Sbjct 19533222 CCTCCAAGCCCAGCTCCTCTCTGTCTCCCAACAGCATCGATCTCATCTATGAATACAATG 19533163 Query 16092 CATGG-----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCA 16146 || || | |||||| || ||| || | ||||| ||| | ||||| | Sbjct 19533162 CAAGGCGCTTTGGATTTT-----GCCTTTTCGAACAAATCCCTTACCCTGGACGCGCCTA 19533108 Query 16147 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 16206 | ||||| |||| ||||||||| | | || | ||| || ||||| || | || Sbjct 19533107 CTCCAACGAACAACTCCACAAACTCCGAAGCTGCGCATGAGAAAAAGGGCACCCCGGCTT 19533048 Query 16207 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 | || || | ||||| || | |||||||| || ||||| || Sbjct 19533047 CCCCTGCCACGGCTCTCGCCAATAGAGTCTTTCCGGTACCAGG 19533005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620157202861680