Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq6 87.8 2e-12 seq9 84.2 3e-11 >seq6 Length=121339338 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/94 (82%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 138231 AGAAAGTGATAT--AGTTGGGGCTCTCATAGTGTAGTGGTCAACACTGTGGACTTTGAAT 138288 ||||| |||| | |||||||| || ||| |||||||||| | |||| |||||||||||| Sbjct 28945478 AGAAATTGATTTCAAGTTGGGGTTC-CATGGTGTAGTGGTTAGCACTCTGGACTTTGAAT 28945536 Query 138289 CCACCACCCTAGGTTCGACTCCTAGTGGGAGCTT 138322 ||| | ||| ||||||||||| |||||| ||| Sbjct 28945537 CCAGCGACCTGGGTTCGACTCCCGGTGGGACCTT 28945570 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | |||||||| || Sbjct 53716391 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGAGACC 53716446 >seq9 Length=96604005 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||| | ||||| | | |||||| ||||||||||||||| Sbjct 62082069 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 62082128 Query 136777 GGGAACAGCTTTTAGATATATTTT 136800 |||| || |||| ||||| |||| Sbjct 62082129 GGGACCATTTTTTTGATATTTTTT 62082152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588420750238200