Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq7 131 2e-25 seq2 98.7 1e-15 seq12 96.9 4e-15 seq10 86.0 7e-12 seq4 84.2 3e-11 >seq7 Length=127721098 Score = 131 bits (144), Expect = 2e-25 Identities = 249/364 (68%), Gaps = 2/364 (1%) Strand=Plus/Minus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| || ||||| | | | ||| |||||| || ||| | | || || || || Sbjct 37441558 ATCAAACCGTCCTGGCCTCAACAAAGCGGAATCAAGAATGTCAGCTCTGTTAGTTGCTGC 37441499 Query 9254 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9313 || || | ||||| || | | || ||||||||||| || |||||||| ||||||| Sbjct 37441498 AATTACGATGATACCGGTGTTACCCTCGAAACCATCCATTTCGGTCAAAAGCTGGTTAAG 37441439 Query 9314 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGC 9373 |||||| || | || |||||| || | ||||| | | ||| ||| ||||| Sbjct 37441438 AGTTTGCTCTCTCTCGTCATTCCCTCCACCAATACCAGTTCCTCTTTGTCGTCCAACGGC 37441379 Query 9374 ATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATC 9433 |||||| ||||| | ||||| ||||| || ||| || ||| | | || ||||| Sbjct 37441378 ATCAATTTCATCCACAAAGACGATACAGGGGGCATTCTCCTTGGCCTTCTTGAAAAGATC 37441319 Query 9434 GCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG 9493 ||||| | || || |||||||||||||| || ||||| | | | ||| || | Sbjct 37441318 ACGAACTCGAGAAGCACCAACACCAACAAACATTTCAACAAACTCGGAACCTGAA-ATGG 37441260 Query 9494 -GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTAC 9552 || ||| || ||| || |||||| ||||| || || ||||||||||| || || | Sbjct 37441259 AGAAGAATGGCACACCAGCTTCACCAGCAATTGCCTTAGCAAGAAGAGTCTTTCCGGTTC 37441200 Query 9553 CTGG 9556 | || Sbjct 37441199 CAGG 37441196 >seq2 Length=101023042 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || ||||| || ||||||||||| || || || | || ||| | ||| | ||| Sbjct 61425386 TGAGGCCTTGGAGTTCCAGCATTGAAAAGTGTGGGAGAAGCATGAGTAAACCATCTTTGA 61425445 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| ||| || || | | ||||||||||||| | | || || || | || Sbjct 61425446 GACATCATGTGATAAGTTTTTATAGCAGAATCAATGTCATTCTTATGAATTCCAACTGCA 61425505 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 107346 || | ||| ||||||| |||||| |||| || | | || | || | || | || || Sbjct 61425506 ACCCTCATTAACATGTGTTGGGGCCTTTCTAT-AACCTTCCCTTGAACTTTTAAGAGGTA 61425564 Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | | ||||||||||||||| |||||| ||| || | ||| ||||||| Sbjct 61425565 GGACCTCTCAAGGGTTTTGAAACCAAAATAATCATAGTCAAAGTCCCG 61425612 >seq12 Length=146008498 Score = 96.9 bits (106), Expect = 4e-15 Identities = 306/469 (65%), Gaps = 14/469 (3%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 ||| || || ||| | ||| || || || ||||||| | || || | | | ||| Sbjct 60130891 ATCCAGAATTTCAGGCCTATTAGTGGCAGCAATGACAATGACTCCAGTATTACCAGTAAA 60130832 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||| || ||||| || || || | |||||| |||| |||||||||| || Sbjct 60130831 ACCATCCATTTCAGTCAACAGCTGATTCAAAGTTTGCTCCCTTTCATCATTCCCT---CC 60130775 Query 9344 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 |||| |||| | | || |||| || |||||||||||||| ||||| || | ||| Sbjct 60130774 ACCAATCCCAGTTCCTCTCTGTCTTCCAACAGCATCAATCTCATCGATGAACACCAAACA 60130715 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 ||| ||| | || | | ||| || || | ||| || || || || ||||| Sbjct 60130714 TGGGGAATTAGCCTTTGCCTTGTTAAACAGGTCCCTAACTCTGGAAGCTCCAACGCCAAC 60130655 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGC 9520 ||||||||| | || | || | ||| | ||| || || | ||| || || Sbjct 60130654 AAACATCTCGATGAACTCTGAACCAGAAAGGGAAAAGAAAGGAACCCCTGCTTCCCCTGC 60130595 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580 |||||| ||| || | |||||||| || ||||| || || | |||| || Sbjct 60130594 AATGGCCTTGGCCAGCAATGTCTTACCAGTCCCTGGAGGTCCAATTAGAA--GCACTCCT 60130537 Query 9581 T--GGAATCTTGGCGCCACTTCC--AAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAA 9636 | ||||| |||| ||| || | || | | ||| |||| || | || ||||| | Sbjct 60130536 TTGGGAATTGTGGCACCAATTGCTGCAAATTTTTCTGGGGTT--TTTAAGAACTCCACTA 60130479 Query 9637 TCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 9685 ||||| || || | ||||| | ||||| || | |||||| |||| Sbjct 60130478 CCTCTTGAAAATCTTGCTTGGCTTCATCAATACCAGCTACATCGTTAAA 60130430 >seq10 Length=114683840 Score = 86.0 bits (94), Expect = 7e-12 Identities = 190/283 (67%), Gaps = 14/283 (5%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| |||| | ||||| || || || || | ||||||||| || Sbjct 19533280 AAATCCATCCATCTCAGTCAGCAACTGGTTGATTGTCTGCTCTCTTTCATCATTTCCT-- 19533223 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | | | ||||| | | || | || || ||||| |||||||| ||||| ||||| Sbjct 19533222 CCTCCAAGCCCAGCTCCTCTCTGTCTCCCAACAGCATCGATCTCATCTATGAATACAATG 19533163 Query 9399 CATGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCA 9453 || || | |||||| || |||| || | ||| | ||||| ||||| | Sbjct 19533162 CAAGGCGCTTTGGATTTT-----GCCTTTTCGAACAAATCCCTTACCCTGGACGCGCCTA 19533108 Query 9454 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 9513 | ||||| |||| ||||||||| | | || | ||| || ||||| || | || Sbjct 19533107 CTCCAACGAACAACTCCACAAACTCCGAAGCTGCGCATGAGAAAAAGGGCACCCCGGCTT 19533048 Query 9514 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | || || | ||||| || | |||||||| || ||||| || Sbjct 19533047 CCCCTGCCACGGCTCTCGCCAATAGAGTCTTTCCGGTACCAGG 19533005 >seq4 Length=137675496 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || ||||| || ||||||||||| || || || | || ||| ||||| | ||| Sbjct 106876833 TGAGGCCTTGGAGTGCCAGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCATCTTTGA 106876774 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| ||| || || | | ||||||||||||| ||| || || || | || Sbjct 106876773 GACATCATGTGATAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCA 106876714 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 107346 || | ||| ||||||| || || |||| || | | || | || | | | ||||| Sbjct 106876713 ACCCTCATTAACATGTGCTGAGGCCTTTCTAT-AACCTTCCCTTGAACTTTCAAGAGATA 106876655 Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | |||| |||||||||| ||||||||| || | ||| |||| || Sbjct 106876654 AGACCTCTCCAGGGTTTTGAAGCCAAAGTAATCATAGTCAAAGTCACG 106876607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589424602975560