Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq9 125 8e-24 seq1 102 1e-16 >seq9 Length=96604005 Score = 125 bits (138), Expect = 8e-24 Identities = 293/440 (67%), Gaps = 9/440 (2%) Strand=Plus/Minus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 || || || |||||||| || | ||||||||||| || || || || || || ||| Sbjct 49336393 AAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 49336334 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAG 37292 ||||| |||||||| || || ||||| | ||||||||| || ||| ||| || || Sbjct 49336333 AATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAA 49336274 Query 37293 AAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCA 37352 || || || || || ||||| || | | ||| |||||||| | || Sbjct 49336273 AAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGTCG 49336214 Query 37353 GAAATCCAtttttttGTCCAATCTGCCTTTAATTTA---ACACATTCAATTGTTTCAATT 37409 |||||||| | | ||| || || ||| ||| ||||| | || || || Sbjct 49336213 ---ATCCATTTCATAGCCCACTCGGCTTTT---TTAGCCACACACGGCACCGTCTCGATG 49336160 Query 37410 GCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTA 37469 || || ||| ||| ||||| || |||| |||| ||||| || | || | ||| Sbjct 49336159 GCGCGGAAAAGACGGTTCTTTTCGTCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTG 49336100 Query 37470 TACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCA 37529 ||||| || ||||| |||||||| ||||| || || |||||||||||| | || || Sbjct 49336099 TACATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCG 49336040 Query 37530 GATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTA 37589 || | ||| || || || | |||| ||| | ||| ||| ||||| ||||| Sbjct 49336039 GAGATTTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAG 49335980 Query 37590 GCTGCAAAGAAAGCAAGAAC 37609 || ||||| || || ||||| Sbjct 49335979 GCGGCAAAAAAGGCGAGAAC 49335960 >seq1 Length=147124936 Score = 102 bits (112), Expect = 1e-16 Identities = 234/348 (67%), Gaps = 11/348 (3%) Strand=Plus/Plus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 || || ||||| || ||||| | ||||||||||| | ||||| || || || || ||| Sbjct 98687272 AAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTT 98687331 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCA-AAAGATCCAGAAAA 37291 ||||| |||||||| || | ||||| | ||||||||| || ||| ||| || || || Sbjct 98687332 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGC-GCAGAAACTGCCGGAGAA 98687390 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATC 37351 || || ||||| || || || || | | ||| | |||| | | || Sbjct 98687391 AAATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCCGCCGTC 98687450 Query 37352 AGAAATCCAtttttttGTCCAATCTGCCTTTAATTTA---ACACATTCAATTGTTTCAAT 37408 |||||||| | |||||| || || |||| || || | |||||| | Sbjct 98687451 ---GATCCATTTGAAAGCCCAATCGGCTTT---TTTAGCCACGCACGGCACCGTTTCAGT 98687504 Query 37409 TGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACT 37468 || | ||||| ||||||||| |||| | |||||||| || | || | ||| Sbjct 98687505 AGCGTGGAAGAGGCGGTTTTTTTCGGTGGCATCTTTGATATAAGTTTCGAGGAGGAGACT 98687564 Query 37469 ATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAA 37516 |||||| |||||||| ||||| || || || || || || |||||||| Sbjct 98687565 ATACATCTCAGAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAA 98687612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591758400740760