Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq11 91.5 3e-13 >seq11 Length=105699404 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/153 (75%), Gaps = 4/153 (3%) Strand=Plus/Minus Query 150675 GCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG-TGTCATCGGTGCAACAAC- 150732 ||||| |||| || ||| || ||| || ||| | || ||| ||||| ||||| || Sbjct 102552714 GCAATCTGTTGAAGCCTATGCTTGGTCGGGGAGAACTGCGATGT-ATCGGGGCAACGACT 102552656 Query 150733 CTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGTCGTTTCATGAA 150792 ||| ||||||||||||||| ||||||| |||||| | || || | ||||||||| | | Sbjct 102552655 CTA-GATGAATATCGTAAATACATTGAGAAAGATCCTGCCCTGGAACGTCGTTTCCAGCA 102552597 Query 150793 GGTTGATATTGTTGAACCGACACTTGAAGAAAC 150825 |||| || ||| | |||| ||| | ||||| || Sbjct 102552596 GGTTTATGTTGATCAACCAACAGTAGAAGATAC 102552564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1146481476582662