Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq10 102 7e-17 seq11 100 2e-16 seq7 93.3 4e-14 >seq10 Length=114683840 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| ||||| | ||||| || ||||| ||| ||| |||| ||| Sbjct 38459768 ATGCAGATATTTGTGAAAACCCTTACGGGCAAGACCATCACCCTCGAGGTGGAAAGTTCT 38459827 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || ||||| || ||| ||||| || || | || ||| ||| Sbjct 38459828 GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCTCCAGACCAA 38459887 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || |||||| | |||||| ||| | || ||||| ||| Sbjct 38459888 CAGAGGCTTATCTTTGCAGGTAAACAACTTGAAGATGGCCGAACCCTCGCTGATTACAAC 38459947 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 || || ||||| ||||| || ||| Sbjct 38459948 ATCCAGAAAGAGTCTACCCTCCAC 38459971 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| | || ||||||||||| ||| || |||| || Sbjct 38459540 ATGCAGATCTTTGTGAAAACCCTTACTGGTAAAACCATCACCCTTGAGGTGGAAAGCTCC 38459599 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| |||||| |||||||| || | || ||| ||| Sbjct 38459600 GATACTATTGATAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAA 38459659 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||| ||||| || |||||| | || ||| |||| | ||||| || ||| Sbjct 38459660 CAGAGGCTTATTTTTGCCGGAAAACAACTCGAGGATGGCCGAACTCTTGCCGACTACAAC 38459719 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 || ||||| || || || || ||| Sbjct 38459720 ATCCAAAAGGAGTCCACCCTCCAC 38459743 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| ||||| || ||||| | || || || ||||| ||| ||| |||| ||| Sbjct 38466224 ATGCAGATATTCGTGAAAACTCTTACTGGCAAGACCATCACCCTCGAGGTGGAAAGTTCT 38466283 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || ||| ||||| || || | || ||| ||| Sbjct 38466284 GATACAATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAA 38466343 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || ||||| | |||||| |||| | || ||||| ||| Sbjct 38466344 CAGAGGCTTATCTTTGCCGGTAAACAGCTTGAAGATGGCCGAACTCTTGCGGATTACAAC 38466403 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 || || ||||| ||||| || ||| Sbjct 38466404 ATCCAGAAAGAGTCTACCCTCCAC 38466427 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| ||||| || ||||| | || || || ||||| ||| ||| |||| ||| Sbjct 38471708 ATGCAGATATTCGTGAAAACTCTTACTGGCAAGACCATCACCCTCGAGGTGGAAAGTTCT 38471767 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || ||| ||||| || || | || ||| ||| Sbjct 38471768 GATACAATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAA 38471827 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || ||||| | |||||| |||| | || ||||| ||| Sbjct 38471828 CAGAGGCTTATCTTTGCCGGTAAACAGCTTGAAGATGGCCGAACTCTTGCGGATTACAAC 38471887 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 || || ||||| ||||| || ||| Sbjct 38471888 ATCCAGAAAGAGTCTACCCTCCAC 38471911 >seq11 Length=105699404 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| ||||| || || ||||| ||| |||| || ||| Sbjct 76982576 ATGCAAATCTTTGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGAGAGTTCC 76982635 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | | ||| || || ||||| || ||| | || || ||| Sbjct 76982636 GACACCATCGACAACGTTAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCTGACCAA 76982695 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | | ||||| || |||||||||||||||||| | || |||| |||||||| Sbjct 76982696 CAGCGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGAGGACCTTGGCTGATTATAAT 76982755 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||| ||||| || || ||| | || || || | || |||||||| Sbjct 76982756 ATCCAAAAGGAATCCACCCTTCACCTTGTTTTGAGGCTTCGTGGAGGGAT 76982805 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || || || || ||||| || ||| || ||| || Sbjct 76982804 ATGCAGATTTTTGTCAAGACTTTGACAGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 76982863 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| ||| || || || || ||| | || ||||| Sbjct 76982864 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 76982923 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || || |||||||| |||||||||||||||||| | ||| |||| ||||||||| Sbjct 76982924 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 76982983 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 ||||| ||||| ||||| || ||| Sbjct 76982984 ATTCAGAAAGAGTCTACCCTTCAC 76983007 >seq7 Length=127721098 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| || || | || || || |||||||| || || |||| Sbjct 44543037 ATGCAAATATTTGTTAAGACTCTTACCGGAAAGACCATTACTTTGGAGGTTGAGAGTTCA 44542978 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || ||||| || ||| ||||||||||| | ||| ||| ||| Sbjct 44542977 GATACCATTGACAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATTCCCCCAGACCAA 44542918 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | |||||||| || || ||| | |||||| ||| | || ||||| ||| Sbjct 44542917 CAGAGGTTGATCTTTGCCGGTAAGCAACTTGAAGATGGCCGCACTCTCGCTGATTACAAC 44542858 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || ||||| ||||| || || ||| |||| Sbjct 44542857 ATCCAAAAGGAATCCACCCTCCACTTGGT 44542829 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| ||||| | || || || || || ||| ||| |||| || Sbjct 44510182 ATGCAAATATTTGTCAAAACTCTTACTGGCAAGACAATCACCCTTGAAGTGGAAAGCTCC 44510123 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || ||| |||||||| || | || || ||| Sbjct 44510122 GACACAATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCTCCTGACCAA 44510063 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || ||||||||||| ||| || | || || || ||| Sbjct 44510062 CAGAGGCTTATCTTTGCTGGAAAACAATTGGAGGATGGCCGCACCCTTGCTGACTACAAC 44510003 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 || || ||||| ||||| || ||| Sbjct 44510002 ATCCAGAAAGAGTCTACCCTCCAC 44509979 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| | || || || ||||| ||| ||| ||| |||| Sbjct 86219704 ATGCAAATCTTTGTTAAAACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGAGTTCA 86219763 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| || ||| || || || || | || ||||| Sbjct 86219764 GACACCATTGATAATGTGAAGGCTAAGATCCAAGATAAGGAAGGGATCCCACCGGATCAG 86219823 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| ||||||||| | || ||| || | ||||| || ||| Sbjct 86219824 CAGAGGCTTATCTTTGCTGGCAAACAACTTGAGGATGGCCGCACGCTAGCCGACTACAAC 86219883 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| |||||||| || || ||| |||| Sbjct 86219884 ATTCAGAAAGAATCCACCCTTCACTTGGT 86219912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425013781068801