Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq4 111 8e-20 >seq4 Length=137675496 Score = 111 bits (122), Expect = 8e-20 Identities = 159/222 (72%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 ||||||||||||| ||||| |||||||| || |||| ||||| |||||||| || || Sbjct 106877181 TACCTTTTCTTTTCCCTCCTCCTTGATCAACATATCGAGCAGTATCATTGAACACCCGCA 106877122 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 |||||| || | |||| | || || ||||| | | |||| | ||||| | || Sbjct 106877121 GCATTGGGACAATTCCATTAGATGTACCATTTGTTCCACGAATATAACTACCTGTGGCTC 106877062 Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATC-- 26241 ||||| |||| || || ||| ||||| ||||| |||| ||| | ||||| || Sbjct 106877061 GAATATTGTGAACAGAAACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCT 106877002 Query 26242 TGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | ||| || || | ||||||| || |||||| ||||||| Sbjct 106877001 TCAAA--GTTTCATATATTCCTTCAATACTATCATCTTTCAT 106876962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252807413460425