Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq7 98.7 1e-15 seq2 98.7 1e-15 seq4 93.3 5e-14 seq10 82.4 9e-11 >seq7 Length=127721098 Score = 98.7 bits (108), Expect = 1e-15 Identities = 224/335 (67%), Gaps = 4/335 (1%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || |||||||| || || || || || || |||||| | ||| |||||| Sbjct 37441196 CCTGGAACCGGAAAGACTCTTCTTGCTAAGGCAATTGCTGGTGAAGCTGGTGTGCCATTC 37441255 Query 175375 ATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGG 175432 || || | || | | | ||||| || |||||||||||||| ||||| | | Sbjct 37441256 TTCTCCATT--TCAGGTTCCGAGTTTGTTGAAATGTTTGTTGGTGTTGGTGCTTCTCGAG 37441313 Query 175433 TTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 |||| ||||| || | | ||| || ||| || ||||| ||||| | ||||| | Sbjct 37441314 TTCGTGATCTTTTCAAGAAGGCCAAGGAGAATGCCCCCTGTATCGTCTTTGTGGATGAAA 37441373 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAAC 175552 ||||||| || || ||| | | ||||| | || |||||||||||||| | Sbjct 37441374 TTGATGCCGTTGGACGACAAAGAGGAACTGGTATTGGTGGAGGGAATGACGAGAGAGAGC 37441433 Query 175553 AAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGG 175612 |||| |||| || || | ||||| |||||||| || || | | || || || | | Sbjct 37441434 AAACTCTTAACCAGCTTTTGACCGAAATGGATGGTTTCGAGGGTAACACCGGTATCATCG 37441493 Query 175613 TTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 | ||||| || ||||| | | || || |||||| Sbjct 37441494 TAATTGCAGCAACTAACAGAGCTGACATTCTTGAT 37441528 Score = 95.1 bits (104), Expect = 1e-14 Identities = 245/370 (66%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| |||||||| || | || |||| | ||||| ||| | || || || Sbjct 23626893 CCTGGTACTGGAAAGACTCTATTGGCGAGAGCAGTAGCGGGAGAAGCCGGGGTTCCGTTT 23626834 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| |||| | | ||||||||| |||| ||||| || ||||| || || Sbjct 23626833 TTCTCATGCGCTGCTTCTGAGTTTGTGGAGTTGTTCGTTGGAGTAGGTGCATCCAGAGTA 23626774 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGA 175490 | || | || || | ||| ||| ||| || || || |||||||||||||| Sbjct 23626773 AGGGACTTATTCGATAAGGCC----AAATCCAAGGCTCCTTGCATCGTCTTCATTGATGA 23626718 Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGA 175550 ||||||||| || || | || | | |||||| | || |||||| |||||||| Sbjct 23626717 GATTGATGCTGTTGGGAGACAGAGAGGAGCTGGTCTTGGAGGAGGAAATGATGAGAGAGA 23626658 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATG-AGACTGGCATTG 175609 || ||||| ||||| | | || ||||||||||| ||| || | | |||| | Sbjct 23626657 GCAGACAATCAATCAGTTGTTGACTGAGATGGATGGATTT-TCAGGGAATTCTGGTGTCA 23626599 Query 175610 TGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTC 175669 | ||| | || || || || | |||| | ||||||| ||| | | || |||||| Sbjct 23626598 TTGTTTTGGCAGCAACCAACAGACCGGATGTTCTTGATGCCGCTTTGTTGCGACCGGGTA 23626539 Query 175670 GTTTTGATCG 175679 | ||||| || Sbjct 23626538 GGTTTGACCG 23626529 >seq2 Length=101023042 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186 ||||||| ||| | || ||| |||||| ||||||||||||||| | ||| || | || Sbjct 61425612 CGGGACTTTGACTATGATTATTTTGGTTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAA 61425553 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | || |||| || || ||||||| ||| |||| ||| | || || Sbjct 61425552 GTTCAAGGGAAGGTT-ATAGAAAGGCCCCAACACATGTTAATGAGGGTTGCAGTTGGAAT 61425494 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 || | | ||||||||||||| | | || || ||| |||||| ||| | ||| Sbjct 61425493 TCATAAGAATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGTT 61425434 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 | ||| || | || || || ||||||||||| || ||||| || || Sbjct 61425433 TACTCATGCTTCTCCCACACTTTTCAATGCTGGAACTCCAAGGCCTCA 61425386 >seq4 Length=137675496 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186 || |||| ||| | || ||||||||| |||||||||| |||| | ||||| | | Sbjct 106876607 CGTGACTTTGACTATGATTACTTTGGCTTCAAAACCCTGGAGAGGTCTTATCTCTTGAAA 106876666 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | || |||| || ||| ||||||| ||| |||| || | || || Sbjct 106876667 GTTCAAGGGAAGGTT-ATAGAAAGGCCTCAGCACATGTTAATGAGGGTTGCTGTTGGAAT 106876725 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 || ||| ||||||||||||| | | || || ||| |||||| ||| | ||| Sbjct 106876726 TCATAAGGATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGTT 106876785 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || ||| || | || || || ||||||||||| || ||||| || || Sbjct 106876786 CACTCATGCTTCTCCCACTCTTTTCAATGCTGGCACTCCAAGGCCTCA 106876833 >seq10 Length=114683840 Score = 82.4 bits (90), Expect = 9e-11 Identities = 189/283 (67%), Gaps = 14/283 (5%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| |||||||| || | || ||||| | || || ||| | || || || Sbjct 19533005 CCTGGTACCGGAAAGACTCTATTGGCGAGAGCCGTGGCAGGGGAAGCCGGGGTGCCCTTT 19533064 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| | || | | ||||||||| |||| ||||| || || || ||||| Sbjct 19533065 TTCTCATGCGCAGCTTCGGAGTTTGTGGAGTTGTTCGTTGGAGTAGGCGCGTCCAGGGTA 19533124 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA-----CCATGTATTGTCTTCATTGATG 175489 | ||| | || |||| || |||||| | || || ||||| ||||| |||| Sbjct 19533125 AGGGATTTGTTCGAAAAGGC-----AAAATCCAAAGCGCCTTGCATTGTATTCATAGATG 19533179 Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAG 175547 |||| ||||| || || | || | | ||||| | | | | || |||||| || || Sbjct 19533180 AGATCGATGCTGTTGGGAGACAGAGAGGAGCTGGGCTTGGAGG--AGGAAATGATGAAAG 19533237 Query 175548 AGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 ||| || ||||| || || | || || ||||||||||| ||| Sbjct 19533238 AGAGCAGACAATCAACCAGTTGCTGACTGAGATGGATGGATTT 19533280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596007191466720