Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq7 122 2e-22 seq10 116 7e-21 seq13 114 3e-20 seq12 109 1e-18 seq11 109 1e-18 >seq7 Length=127721098 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| |||||||| | || | || | |||| |||||| ||| || || ||| Sbjct 44509953 ATGCCACCCCTAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGGATGTTGTAGTCA 44510012 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| ||||||||||| ||||||||||| | |||||||| ||||| Sbjct 44510013 GCAAGGGTGCGGCCATCCTCCAATTGTTTTCCAGCAAAGATAAGCCTCTGTTGGTCAGGA 44510072 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || || || |||||| || | || || ||| Sbjct 44510073 GGGATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTATCAATTGTGTCGGAGCTTTCC 44510132 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || || || || ||||| | ||||| | |||||| ||||| Sbjct 44510133 ACTTCAAGGGTGATTGTCTTGCCAGTAAGAGTTTTGACAAATATTTGCAT 44510182 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| || | || ||||| | ||||| ||| || |||||||||||| Sbjct 86220389 ATACCACCACGAAGGCGGAGAACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCG 86220330 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | | |||| || | |||||| |||||||| || ||||| ||||| || ||| Sbjct 86220329 GCAAGAGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGT 86220270 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| || || || || ||| |||||| || | ||| || || Sbjct 86220269 GGGATTCCTTCTTTGTCCTGAATCTTGGCTTTCACATTATCAATGGTATCCGAACTCTCC 86220210 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||||| || || ||||| | ||||| | ||| || ||||| Sbjct 86220209 ACCTCCAAGGTAATTGTCTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 86220160 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | || || | || | ||| | ||||| ||| || |||||| || |||| Sbjct 44509043 ACCACCACGGAGGCGAAGGACAAGATGCAGAGTAGACTCCTTCTGGATATTGTAGTCAGC 44509102 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || ||||| | || ||||| || || ||||||||||| || ||||| ||||| || || Sbjct 44509103 TAGGGTTCGACCGTCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGGGG 44509162 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||| || || || || || || ||||||||| || | ||| || || || Sbjct 44509163 AATTCCCTCCTTGTCCTGAATCTTTGCTTTTACATTGTCAATCGTATCCGAGCTCTCAAC 44509222 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || |||||||| ||||| || || || | |||||||||||| Sbjct 44509223 CTCCAGGGTGATGGTTTTCCCAGTCAAGGTCTTGACAAATATCTGCAT 44509270 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||| |||||| | ||||| || | || | |||||| |||||| |||||| Sbjct 86220161 ATGCCACCTCGAAGACGAAGTACTAGGTGGAGGGTGGACTCTTTTTGGATATTGTAATCA 86220102 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||| || || |||| || | || || ||||||||||| | ||||| ||||| ||| Sbjct 86220101 GCTAAGGTGCGACCATCTTCAAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCTGGT 86220042 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || ||||||||| ||| | || || ||| Sbjct 86220041 GGGATCCCTTCCTTGTCTTGGATCTTTGCCTTTACATTATCTATTGTGTCAGAGCTTTCA 86219982 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||||| || || ||||| | || || | ||| || ||||| Sbjct 86219981 ACCTCCAAGGTAATTGTCTTTCCAGTGAGAGTCTTGACAAAGATTTGCAT 86219932 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| || | || | ||| | ||||| ||| || |||||||||||||| Sbjct 86220843 ACCACCGCGAAGGCGAAGGACAAGATGCAGAGTAGACTCCTTTTGGATATTATAATCAGC 86220784 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||||| | |||| || | ||| || |||||||| || | || || || || ||||| Sbjct 86220783 CAATGTCCTGCCATCTTCAAGTTGCTTGCCAGCAAATATGAGCCTTTGCTGGTCTGGTGG 86220724 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || ||||| || || || ||||| || | ||||| ||| || Sbjct 86220723 GATCCCTTCCTTGTCTTGAATCTTTGCCTTAACATTGTCAATGGTGTCTGAACTTTCAAC 86220664 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| || || || ||||| | || |||| ||| |||||||| Sbjct 86220663 CTCTAGAGTGATAGTCTTTCCAGTAAGAGTCTTAACAAAGATCTGCAT 86220616 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| || | |||||| ||||||||||| | ||||| ||||| ||||| || ||||| | Sbjct 86219860 CATCCTCAAGTTGTTTGCCAGCAAAGATAAGCCTCTGCTGATCCGGTGGGATCCCTTCCT 86219801 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 ||||||| || ||| || |||||| || | ||||| || || || || || | Sbjct 86219800 TATCTTGGATCTTAGCCTTCACATTATCAATGGTGTCTGAACTCTCCACCTCGAGGGTGA 86219741 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||| || ||||| | ||||||| ||| || ||||| Sbjct 86219740 TGGTCTTGCCAGTGAGGGTTTTAACAAAGATTTGCAT 86219704 Score = 96.9 bits (106), Expect = 7e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || || |||||||| || || || ||||| | || | ||| ||| || || ||||| || Sbjct 44509269 ATCCCTCCTCTAAGGCGCAAAACCAAATGCAGGGTCGACTCCTTTTGA-ATGTTATAGTC 44509327 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | | || | | || || | || || || ||||| || || |||||||| ||||| Sbjct 44509328 CGCAAGGGTCCTCCCGTCCTCGAGCTGCTTTCCGGCAAAAATCAACCTCTGTTGGTCAGG 44509387 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || || || |||||||| || || || |||||| | | || || || Sbjct 44509388 TGGGATACCCTCCTTATCTTGGATCTTGGCCTTAACATTATCAACCGTGTCGGAGCTCTC 44509447 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | |||||||||||||| || || ||||| | ||||||||||||| Sbjct 44509448 CACCTCCAACGTAATGGTTTTACCGGTCAAAGTTTTCACAAATATCTGCATT 44509499 >seq10 Length=114683840 Score = 116 bits (128), Expect = 7e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGA 192368 ||||| | |||||| | || | || | ||| | ||| ||| || ||||| ||||||| Sbjct 64670772 CCACCACGAAGACGAAGAACAAGGTGAAGAGTGGACTCCTTTTGA-ATATTGTAATCAGC 64670830 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || | | | || |||| |||||| |||||||| || || || || ||||| ||||| Sbjct 64670831 CAAAGTCCTTCCGTCTTCCAGTTGTTTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGG 64670890 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||||||||| || || || || ||| || ||| || | ||| || || || Sbjct 64670891 AATTCCTTCTTTGTCCTGAATCTTCGCTTTCACGTTATCAATCGTATCCGAGCTCTCCAC 64670950 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| |||||| || ||||| || || || || | || |||||||| Sbjct 64670951 TTCTAAAGTAATCGTCTTACCGGTCAAAGTCTTGACGAAGATCTGCAT 64670998 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || ||||| | |||| || | || | ||| || ||| || || || Sbjct 38459769 ATGCCACCCCTTAGACGAAGGACTAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCG 38459710 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| |||| || | |||||| || ||||| || | |||||||| || || Sbjct 38459709 GCAAGAGTTCGGCCATCCTCGAGTTGTTTTCCGGCAAAAATAAGCCTCTGTTGGTCTGGA 38459650 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| ||||| || |||||| |||| ||| || ||| Sbjct 38459649 GGAATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTATCAATAGTATCGGAGCTTTCC 38459590 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || |||||||||||||| | ||||| | ||| |||||||| Sbjct 38459589 ACCTCAAGGGTGATGGTTTTACCAGTAAGGGTTTTCACAAAGATCTGCAT 38459540 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||| | || | || | |||| |||||| ||| || |||||| Sbjct 38459997 ATCCCACCCCGAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGGATGTTGTAATCA 38459938 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| |||| || | ||||||||| |||||||| | |||||||| || || Sbjct 38459937 GCGAGGGTTCGGCCATCTTCAAGTTGTTTACCTGCAAAGATAAGCCTCTGTTGGTCTGGA 38459878 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || |||||| || | ||| || ||| Sbjct 38459877 GGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCAATCGTATCAGAACTTTCC 38459818 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || || || | ||||| | |||||||||||| Sbjct 38459817 ACCTCGAGGGTGATGGTCTTGCCCGTAAGGGTTTTCACAAATATCTGCAT 38459768 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| |||||||| | || | || | |||| |||||| ||| || ||||| Sbjct 38466453 ATCCCACCCCTAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGGATGTTGTAATCC 38466394 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| |||| || | |||||||| |||||||| | |||||||| || ||| Sbjct 38466393 GCAAGAGTTCGGCCATCTTCAAGCTGTTTACCGGCAAAGATAAGCCTCTGTTGGTCTGGT 38466334 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || |||||| || | ||| || ||| Sbjct 38466333 GGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCAATTGTATCAGAACTTTCC 38466274 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | ||||| | ||||||||||| Sbjct 38466273 ACCTCGAGGGTGATGGTCTTGCCAGTAAGAGTTTTCACGAATATCTGCAT 38466224 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| |||||||| | || | || | |||| |||||| ||| || ||||| Sbjct 38471937 ATCCCACCCCTAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGGATGTTGTAATCC 38471878 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| |||| || | |||||||| |||||||| | |||||||| || ||| Sbjct 38471877 GCAAGAGTTCGGCCATCTTCAAGCTGTTTACCGGCAAAGATAAGCCTCTGTTGGTCTGGT 38471818 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || |||||| || | ||| || ||| Sbjct 38471817 GGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCAATTGTATCAGAACTTTCC 38471758 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | ||||| | ||||||||||| Sbjct 38471757 ACCTCGAGGGTGATGGTCTTGCCAGTAAGAGTTTTCACGAATATCTGCAT 38471708 Score = 96.9 bits (106), Expect = 7e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| || || | ||| ||||| |||| ||||| || || ||||||||||| || ||| Sbjct 38460861 ATATTGTAGTCTGCTAAAGTTCGACCATCCTCCAACTGCTTTCCAGCAAAGATCAACCTC 38460802 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || || || || || || || || || || ||| ||| ||||| || | Sbjct 38460801 TGCTGGTCCGGAGGAATCCCCTCCTTGTCCTGAATCTTAGATTTCACATTGTCAATCGTG 38460742 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || || || || || || |||||||| ||||| || || || | ||||||||| Sbjct 38460741 TCCGAGCTCTCCACCTCCAGGGTGATGGTTTTCCCAGTCAAGGTCTTCACGAATATCTGC 38460682 Query 192535 ATT 192537 ||| Sbjct 38460681 ATT 38460679 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | || || | || || || | |||| |||||| |||||||||||| Sbjct 38466909 ATTCCACCACGCAGTCGGAGCACCAAGTGAAGGGTAGACTCTTTCTGGATATTATAATCT 38466850 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| | |||| || | ||||| |||||||| || || ||||| ||||| ||| Sbjct 38466849 GCAAGTGTCCTACCATCTTCGAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGATCTGGT 38466790 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || ||| ||||||||| || | || || || Sbjct 38466789 GGAATCCCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTGTCAGAACTCTCA 38466730 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | |||||| || || || || | || || | ||| || ||||| Sbjct 38466729 ACTTCCAAAGTAATAGTCTTTCCGGTGAGAGTCTTCACAAAAATTTGCAT 38466680 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | || || | || || || | |||| |||||| |||||||||||| Sbjct 38472621 ATTCCACCACGCAGTCGGAGCACCAAGTGAAGGGTAGACTCTTTCTGGATATTATAATCT 38472562 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| | |||| || | ||||| |||||||| || || ||||| ||||| ||| Sbjct 38472561 GCAAGTGTCCTACCATCTTCGAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGATCTGGT 38472502 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || ||| ||||||||| || | || || || Sbjct 38472501 GGAATCCCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTGTCAGAACTCTCA 38472442 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | |||||| || || || || | || || | ||| || ||||| Sbjct 38472441 ACTTCCAAAGTAATAGTCTTTCCGGTGAGAGTCTTCACAAAAATTTGCAT 38472392 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| || |||| || ||||| |||| ||||| || || |||||||| || || || Sbjct 38467318 GATATTGTAGTCAGCTAGAGTTCGACCATCCTCCAACTGCTTCCCAGCAAATATCAACCT 38467259 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || ||||| || || || || || || || || ||| ||||| || | Sbjct 38467258 CTGCTGGTCTGGTGGAATCCCCTCCTTGTCCTGAATCTTGGCTTTCACATTGTCAATGGT 38467199 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || || || || || || ||||||||||| || || || || | |||||||| Sbjct 38467198 GTCCGAGCTCTCGACCTCCAGGGTGATGGTTTTACCGGTCAAGGTCTTCACGAATATCTG 38467139 Query 192534 CAT 192536 ||| Sbjct 38467138 CAT 38467136 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| || |||| || ||||| |||| || || || ||||||||||| || || || Sbjct 38473258 GATATTGTAGTCAGCTAGAGTTCGACCATCCTCTAACTGCTTACCAGCAAATATCAACCT 38473199 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || ||||| || || || || || || ||||| ||| ||||| || | Sbjct 38473198 CTGCTGGTCTGGTGGAATCCCCTCCTTGTCCTGAATTTTCGCTTTCACATTGTCGATCGT 38473139 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||| || || || || || || ||||| || || || || || | |||||||| Sbjct 38473138 GTCTGAGCTCTCCACCTCCAGGGTGATTGTTTTCCCGGTCAAGGTCTTCACGAATATCTG 38473079 Query 192534 CAT 192536 ||| Sbjct 38473078 CAT 38473076 >seq13 Length=144148110 Score = 114 bits (126), Expect = 3e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | || || || | || | ||| || ||| ||||| ||| Sbjct 116705482 ATACCACCACGAAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCA 116705423 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| |||| ||| ||||||||||| || | |||||||| || || Sbjct 116705422 GCCAGGGTACGGCCATCCTCCAGTTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGG 116705363 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || || || ||||| || |||||| || | |||||| ||| Sbjct 116705362 GGAATTCCCTCCTTGTCCTGAATTTTTGCCTTAACATTATCAATGGTATCTGAACTCTCT 116705303 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | |||||||| || ||||| || || |||| ||| || |||||| Sbjct 116705302 ACCTCCAATGTAATGGTCTTCCCAGTCAAAGTCTTAACAAAAATTTGCATT 116705252 >seq12 Length=146008498 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | |||||| || || | || | ||| | || || ||||| ||||||| Sbjct 12766458 ACCACCACGAAGACGCAAGACAAGGTGGAGAGTGGATTCCTTCTGAATATTGTAATCAGC 12766517 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || | | |||| ||||||||||| ||||| || || || || || ||||| ||||| Sbjct 12766518 CAAAGTCCTTCCATCTTCCAATTGTTTCCCAGCGAAAATCAACCTTTGCTGATCTGGTGG 12766577 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||||||||| || || || || || ||||| || | ||| || || || Sbjct 12766578 AATTCCTTCTTTGTCCTGAATCTTCGCCTTAACATTGTCGATCGTATCGGAACTCTCCAC 12766637 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | ||| |||||||| ||||| || || || | || |||||||| Sbjct 12766638 CTCCAAAGTTATGGTTTTCCCAGTCAACGTCTTGACGAAAATCTGCAT 12766685 Score = 107 bits (118), Expect = 4e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| ||||| | ||| |||| || | ||| | ||| || ||| |||||||||| | Sbjct 139210774 CCACCCCTAAGCCTTAAAACTAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGCT 139210833 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| |||| |||| ||| ||||||||||| || || ||||| |||||||| || Sbjct 139210834 AGGGTTCGGCCATCTTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGATCAGGAGGG 139210893 Query 192430 ATTCCTTCTTTATCTTG 192446 || ||||||||||| || Sbjct 139210894 ATGCCTTCTTTATCCTG 139210910 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || |||||||||| ||| || | |||| |||||||| || ||||||||||| | || Sbjct 24219625 ATGTTATAATCAGCTAAAGTCCTCCCATCCTCCAATTGCTTTCCAGCAAAGATGAGCCTT 24219566 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||| || || || ||||| || || || || || || |||||| || | | Sbjct 24219565 TGCTGATCTGGAGGGATACCTTCCTTGTCCTGAATCTTCGCCTTCACATTATCAATTGTA 24219506 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || ||| || || | || || ||||| ||||| ||||| |||| || |||||| Sbjct 24219505 TCCGAACTTTCCACCTCCAATGTGATTGTTTTCCCAGTCAATGTCTTAACGAAAATCTGC 24219446 Query 192535 AT 192536 || Sbjct 24219445 AT 24219444 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || |||||||| | ||| |||| || | ||| | ||| || ||| |||||||||| | Sbjct 139205554 CCTCCTCTAAGCCTTAAAACTAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGCT 139205613 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| |||| || | ||| ||||||||||| || || ||||| |||||||| || Sbjct 139205614 AGGGTTCGGCCATCTTCTAGTTGCTTACCAGCAAAAATCAACCTCTGCTGATCAGGAGGG 139205673 Query 192430 ATTCCTTCTTTATCTTG 192446 || || |||||||| || Sbjct 139205674 ATGCCCTCTTTATCCTG 139205690 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||||||||| | || || || |||| || | ||||| || || ||||| | | Sbjct 24219170 GATATTATAATCGGCCAAGGTACGGCCATCTTCGAGCTGTTTGCCGGCGAAGATGAGACG 24219111 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || ||||| || ||||| || ||||| |||||| || ||||| || | Sbjct 24219110 CTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCGATGGT 24219051 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || || ||||| || || ||||| ||||| ||||| ||||| | || ||||| Sbjct 24219050 GTCGGAGCTCTCGACTTCGAGGGTGATGGTCTTACCGGTTAAGGTTTTGACGAAGATCTG 24218991 Query 192534 CAT 192536 ||| Sbjct 24218990 CAT 24218988 >seq11 Length=105699404 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||||||||||| || || | |||| ||||||||||| ||||| ||||| || | Sbjct 76982758 GATATTATAATCAGCCAAGGTCCTCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACG 76982699 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 |||||| |||||||| |||||||| || ||||| || || || || || || | Sbjct 76982698 CTGTTGGTCAGGTGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTAACGTTGTCGATGGT 76982639 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || || ||||| || || ||||| || || ||||| ||||| | ||| || || Sbjct 76982638 GTCGGAACTCTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAGGTTTTGACAAAGATTTG 76982579 Query 192534 CAT 192536 ||| Sbjct 76982578 CAT 76982576 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 192340 GTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCA 192399 |||| |||||| || |||||||||| || || | |||| ||||||||||| || Sbjct 76983000 GTAGACTCTTTCTGAATGTTATAATCAGCCAAAGTCCTCCCATCTTCCAATTGTTTGCCG 76982941 Query 192400 GCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 192459 |||||||| | || || ||||||||||| |||||||| ||||| || || || || Sbjct 76982940 GCAAAGATGAGCCTTTGCTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTTGCCTTA 76982881 Query 192460 ACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 192519 ||||| || | ||| || ||| || || | || || ||||| || || || || Sbjct 76982880 ACATTGTCAATGGTATCGGAGCTTTCAACCTCCAAGGTGATTGTTTTGCCTGTCAAAGTC 76982821 Query 192520 TTAATAAATATCTGCAT 192536 || | ||| |||||||| Sbjct 76982820 TTGACAAAAATCTGCAT 76982804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983528691130650