Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq7 138 3e-27 seq1 113 1e-19 seq10 111 5e-19 seq12 98.7 3e-15 seq2 91.5 4e-13 seq9 84.2 6e-11 >seq7 Length=127721098 Score = 138 bits (152), Expect = 3e-27 Identities = 362/543 (67%), Gaps = 16/543 (3%) Strand=Plus/Plus Query 288817 CCAGATACATCAGGCAAACCCACCCGCACCCTCCTATCAAACCTACCAGAACGAGTTAAT 288876 |||| ||||||||| | | || ||| || ||||||||||| | || || Sbjct 23626496 CCAGCAACATCAGGCCTATCAACTGTAACCTGCCGGTCAAACCTACCCGGTCGCAACAAA 23626555 Query 288877 GCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAAT-AGATTCGGTTTG 288935 || | || | | ||| | |||||| ||||||||||| |||||| | | | || Sbjct 23626556 GCGGCATCAAGAACATCCGGTCTGTTGGTTGCTGCCAA---AACAATGACACCAGAATTC 23626612 Query 288936 CTT--AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTT 288993 | | |||||||||||| || || | ||||| | ||| || || || ||||||||| Sbjct 23626613 CCTGAAAATCCATCCATCTCAGTCAACAACTGATTGATTGTCTGCTCTCTCTCATCATTT 23626672 Query 288994 GAACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATG 289053 |||| | | ||| | | ||| | | | |||||||||||||| || |||||| Sbjct 23626673 ---CCTCCTCCAAGACCAGCTCCTCTC---TGTCTCCCAACAGCATCAATCTCATCAATG 23626726 Query 289054 AAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCT 289113 || | | || |||| || | | || | | ||||| || ||||| | |||||| Sbjct 23626727 AAGACGATGCAAGGAGCCTTGGATTTGGCCTTATCGAATAAGTCCCTTACTCTGGATGCA 23626786 Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATT 289172 || | ||||| ||| || ||||| |||||||| | | ||| | || | || Sbjct 23626787 CCTACTCCAACGAACAACTCCACAAACTCAGAAGCAG-CGCATGAGAAAAACGGAACCCC 23626845 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 ||||| || |||||||| ||||||| || ||||| || || ||||| ||||| | || Sbjct 23626846 GGCTTCTCCCGCTACTGCTCTCGCCAATAGAGTCTTTCCAGTACCAGGAGGTCCAACCAA 23626905 Query 289233 TAGAACTCCCTTT-GGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAA 289291 || ||| ||||| || | ||| || || || | || || || ||| |||| || | Sbjct 23626906 TA-AACAACCTTTCGGGATTTTAGCTCCTAAAGCTGTGTACTTGTCTGGGTTCTTCAAGA 23626964 Query 289292 ATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAG 289351 | || |||| || | ||||| ||||||||| ||| ||| ||||| || | || | Sbjct 23626965 AATCGACAACCTCTTGGAGTTCTAATTTTGCCTGGTCAGCTCCCGCTACGTCGGAGAAGG 23627024 Query 289352 TAA 289354 ||| Sbjct 23627025 TAA 23627027 Score = 104 bits (114), Expect = 7e-17 Identities = 314/474 (66%), Gaps = 26/474 (5%) Strand=Plus/Minus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTG---CTTAAATCCA 288945 || || |||||||| |||||||| | ||| | ||| |||| | || || ||| Sbjct 37441521 ATGTCAGCTCTGTTAGTTGCTGCAATTACGATGATAC---CGGTGTTACCCTCGAAACCA 37441465 Query 288946 TCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAA 289005 ||||| || |||| || ||||| ||||| || || || ||||| |||| Sbjct 37441464 TCCATTTCGGTCAAAAGCTGGTTAAGAGTTTGCTCTCTCTCGTCATTC---CCTC----- 37441413 Query 289006 TCACCCGAATC-GCTCCtttttttA--CCAACAGCATCAATTTCGTCAATGAAAATCACA 289062 |||| | | | |||| ||| | ||||| ||||||||||| || | || | | | Sbjct 37441412 -CACCAATACCAGTTCCTCTTTGTCGTCCAACGGCATCAATTTCATCCACAAAGACGATA 37441354 Query 289063 CACGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGAC 289120 || || | ||| | | || ||| ||| | || | || || || || |||| || Sbjct 37441353 CAGGGGGCATTCTCCTTGGCCTTCTTGAAAAGA--TCACGAACTCGAGAAGCACCAACAC 37441296 Query 289121 CAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCG 289179 ||||| ||||||| ||||| || ||| | || | | || | ||||| ||| ||||| Sbjct 37441295 CAACAAACATTTCAACAAACTCGGAACCTGA-AATGGAGAAGAATGGCACACCAGCTTCA 37441237 Query 289180 CCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACT 289239 || || | |||| | || ||||| ||||| || |||||||| || || | ||||| Sbjct 37441236 CCAGCAATTGCCTTAGCAAGAAGAGTCTTTCCGGTTCCAGGAGGGCCAATGAGAAGAACA 37441177 Query 289240 CCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACA 289299 || || || | ||||| | | || || | || || ||||||| || || ||| Sbjct 37441176 CCTTTAGGGATACGAGCCCCGACCGCGGTAAATCTTTCTGGCTTCTTTAAGAACTCCACA 37441117 Query 289300 ATTTCC-TCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | ||| | ||| || | ||||| |||||| ||| || |||||| |||| || Sbjct 37441116 ACCTCCATGAAG-TCCTGCTTTGCTTCATCAACTCCAGCAACATCATCAAATGT 37441064 Score = 89.7 bits (98), Expect = 2e-12 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 ||| || ||||| ||||| |||||| | |||| ||| | |||| ||| | | Sbjct 14303195 ACAAACGTGGACTCTGTATGCATCACTTTGGTCAAATAATCTTTCCTTAAGGAAATGGGC 14303254 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 ||||| |||| |||||| ||||| || ||||| || || ||||||||||||||||| || Sbjct 14303255 AGCACCATGTGCAATCATGCAATCTCGTTCCATCTCTCCAAAACGAAGACCACCATCACG 14303314 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 || | ||||| ||||| || | || ||| | | |||||| || ||| Sbjct 14303315 AGAACGTCCCTCTGCAGGTTGCCTCGTTAGAATTTGAACAGGACCCCGACCACGTGAATG 14303374 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 |||||| | ||||| ||||| || || ||||| | | ||| || | ||| || Sbjct 14303375 GATCTTATCGTCGACCATGTGCTTTAGTCGTTGGTAATACGTGGGTCCCAAGAATAT 14303431 >seq1 Length=147124936 Score = 113 bits (124), Expect = 1e-19 Identities = 225/328 (69%), Gaps = 8/328 (2%) Strand=Plus/Plus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 |||||| || ||| || || ||||| ||| | | || | ||| ||||| ||||| Sbjct 134907264 ATCATATTTAACCATGATATCCTCCATTGCCTTCACAAGTCGCCTCTGTATATACCCAGT 134907323 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | ||| || || || || ||||| || ||||| | | ||| ||||| |||||||| || Sbjct 134907324 TTCAGAAGTCTTAACTGCAGTATCTATGAGACCTTCTCTACCTCCCATGGCATGGAAAAA 134907383 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTC-GG 302731 | |||| || | ||| | | | | ||| |||| || |||||||| ||| || Sbjct 134907384 GAATTCTTGTGGGGTCAACCCACGCAGATAAGAGTTCTCCACAAAACCACGACTCTCAGG 134907443 Query 302732 GCGAA--TCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCT-CATAGCCGTATGGGA 302788 || || || || ||| ||||| || |||| || | | ||| | | || ||||||| Sbjct 134907444 GCCAAAATCATC---CTTTGTAAAATGGGGCAAAGTAC-GATCTACGAATCCATATGGGA 134907499 Query 302789 TACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAAT 302848 | |||||||| |||||||||||||| || | || | |||| || || || || | Sbjct 134907500 TTCGCTTTCCCTCAACGTTCTGCTGACCGACACAAGCTGTCATTTGGGATATGTTAATGA 134907559 Query 302849 CACTGCCCTTGGAGCCAGCATTTACCAT 302876 ||| ||||| || || ||| | ||||| Sbjct 134907560 AACTTCCCTTTGATCCTGCAGTAACCAT 134907587 >seq10 Length=114683840 Score = 111 bits (122), Expect = 5e-19 Identities = 336/509 (66%), Gaps = 20/509 (4%) Strand=Plus/Minus Query 288853 TCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCC 288912 ||||||||||| | | ||| || | || | | ||||| ||||| ||||||||| Sbjct 19533366 TCAAACCTACCGGGCCTCAATAAAGCCGCATCAAGAACATCGGGCCTGTTAGTTGCTGCC 19533307 Query 288913 AATACAACAATAGATTCGGTTTGCTT---AAATCCATCCATACTTGTTAAAATTTGATTA 288969 || |||| | | ||| | | |||||||||||| || | | || || Sbjct 19533306 AAAACAATGACAC---CGGAATTCCCCGAAAATCCATCCATCTCAGTCAGCAACTGGTTG 19533250 Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttA 289029 | ||| || || |||||||||||| |||| | | | || | |||||| | | | Sbjct 19533249 ATTGTCTGCTCTCTTTCATCATTT---CCTCCTCCA--AGCCCA---GCTCCTCTCTGTC 19533198 Query 289030 --CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 ||||||||||| || || || ||||| | | || || | || | | || || Sbjct 19533197 TCCCAACAGCATCGATCTCATCTATGAATACAATGCAAGGCGCTTTGGATTTTGCCTTTT 19533138 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 | || || || ||||| | ||| || || | ||||| ||| || ||||| || |||| Sbjct 19533137 CGAACAAATCCCTTACCCTGGACGCGCCTACTCCAACGAACAACTCCACAAACTCCGAAG 19533078 Query 289148 CGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | | | ||| | || | || ||||| ||||| || || ||||||| || ||| Sbjct 19533077 CTG-CGCATGAGAAAAAGGGCACCCCGGCTTCCCCTGCCACGGCTCTCGCCAATAGAGTC 19533019 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTT-GGTACTTTTGCCCCAGCAGA 289265 || || || ||||| || || |||||| ||| ||||| || | ||| || || || Sbjct 19533018 TTTCCGGTACCAGGAGGGCCAACTAATA-AACAACCTTTCGGGATTTTAGCTCCTAAAGC 19532960 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 | || || || ||| |||| || || || |||| ||| | ||||| | ||||||| Sbjct 19532959 TGTGTACTTGTCTGGGTTCTTCAAGAAATCGACAACTTCTTGGAGTTCCAACTTTGCCTG 19532900 Query 289326 ATCACATCCTGCTACATCAGCAAAAGTAA 289354 ||| ||| ||||| |||||||| |||| Sbjct 19532899 GTCAGCTCCAGCTACGTCAGCAAAGGTAA 19532871 Score = 104 bits (114), Expect = 7e-17 Identities = 272/408 (67%), Gaps = 9/408 (2%) Strand=Plus/Plus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 |||||||||||| | || | ||||||||| || ||| | |||||||| ||||| Sbjct 88824533 AAATCCATCCATTTCTACTAGCAATTGATTAAGCGTACTTTCACGCTCATCATTAGAACC 88824592 Query 288999 TCTTGAATCACC-CGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 | || | || ||| | ||| | ||||| |||||||| || || || || | Sbjct 88824593 TGAGAAACCTCCACGA----CCTCTTGCTCGACCAATTGCATCAATCTCATCGATAAATA 88824648 Query 289058 TCACACACGGAGAATTTTGTCTCGC-AATTGCAAATAATTCTCTTACACGGGATGCTCCA 289116 | | || |||| | || || || ||| || ||||| || || | ||||| |||| Sbjct 88824649 TTATACTAGGAGCACACTGCCTTGCTTCTTGGAACAAATTC-CTCACCCTGGATGGTCCA 88824707 Query 289117 AGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGC 289175 | ||||||| |||| || | || |||||| | |||| |||| | ||| | |||| || Sbjct 88824708 ACACCAACAAACATCTCCATGAAATCAGAACCTGATA-TTGATAGGAAAGGTACACCTGA 88824766 Query 289176 TTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAG 289235 || || || ||| | || || || ||||| || || || || || ||| | | || Sbjct 88824767 CTCACCGGCAGTTGCTTTTGCTAGGAGAGTCTTTCCCGTACCTGGAGGACCCACCAGCAG 88824826 Query 289236 AACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTC 289295 | | || ||||| | ||| || || || |||||||| ||| |||| | || | Sbjct 88824827 AGCACCTTTTGGAATTTTAGCTCCTAGGTCCTCATATTTCTTTGGGTTCTTAAGGAAGTG 88824886 Query 289296 TACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 |||| |||| | || | ||| |||||||| || || || ||||| Sbjct 88824887 CACAAATTCCATGATCTCTTGTTTAGCCTCATCGCAGCCAGCAACATC 88824934 >seq12 Length=146008498 Score = 98.7 bits (108), Expect = 3e-15 Identities = 267/406 (66%), Gaps = 6/406 (1%) Strand=Plus/Minus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| |||||||| || || | ||||| | ||||| |||||||||||||| | Sbjct 60130835 TAAAACCATCCATTTCAGTCAACAGCTGATTCAAAGTTTGCTCCCTTTCATCATTCCCTC 60130776 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 | | |||| | | | ||| | | || |||||||||||||| || || ||||| | Sbjct 60130775 CACC--AATCCC---AGTTCCTCTCTGTCTT-CCAACAGCATCAATCTCATCGATGAACA 60130722 Query 289058 TCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAA 289117 || ||| || ||||| | || | ||| | || || || | ||| ||||||| Sbjct 60130721 CCAAACATGGGGAATTAGCCTTTGCCTTGTTAAACAGGTCCCTAACTCTGGAAGCTCCAA 60130662 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTT 289177 |||||| |||| || | || || ||| | || | || ||| | || ||||| Sbjct 60130661 CGCCAACAAACATCTCGATGAACTCTGAACCAGAAAGGGAAAAGAAAGGAACCCCTGCTT 60130602 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | ||||| | ||| | ||||| | ||||||||| || || || ||||| || || | Sbjct 60130601 CCCCTGCAATGGCCTTGGCCAGCAATGTCTTACCAGTCCCTGGAGGTCCAATTAGAAGCA 60130542 Query 289238 CTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTA 289297 |||| || || | | | || ||| | | |||| || ||| | ||||| || || | Sbjct 60130541 CTCCTTTGGGAATTGTGGCACCAATTGCTGCAAATTTTTCTGGGGTTTTTAAGAACTCCA 60130482 Query 289298 CAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 | | || | || || | || || |||||| || |||||||| Sbjct 60130481 CTACCTCTTGAAAATCTTGCTTGGCTTCATCAATACCAGCTACATC 60130436 >seq2 Length=101023042 Score = 91.5 bits (100), Expect = 4e-13 Identities = 268/407 (66%), Gaps = 7/407 (2%) Strand=Plus/Minus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 |||||||||||| | || | ||||||||||| ||||| |||||||| ||| Sbjct 69603876 AAATCCATCCATTTCTACTAGCAACTGATTAAGTGTACTTTCCCGCTCATCATTGCCACC 69603817 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 ||| || | | |||| | |||| | ||||||||||| |||||||| | Sbjct 69603816 A---GAAAAGCCTCCACGACCCCTTGCTCTACCTATTGCATCAATTTCATCAATGAATAC 69603760 Query 289059 CACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAG 289118 | || |||| | || || || | |||||| ||| || | || | |||| Sbjct 69603759 AATACTAGGAGCACACTGCCTAGCCTCTTGAAATAAGCTTCTCACTCTTGACGGCCCAAC 69603700 Query 289119 ACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTT 289177 |||||| ||||||| | ||| || || | || | | || | ||| | ||| | || Sbjct 69603699 TCCAACAAACATTTCCATAAAATCTGATCCAGACA-TAGAGAGGAAAGGCACACCAGATT 69603641 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | || || |||| | || ||||||||||| ||||| ||||| || || | | ||| Sbjct 69603640 CACCAGCAGTTGCCTTTGCAAGAAGTGTCTTCCCTGTGCCAGGAGGACCAACAAGAAGAG 69603581 Query 289238 CTCCCTTTGGTACTTTTGCCCCAGCAGACTT-ATATTTCTCAGGGCTCTTTAAAAATTCT 289296 | ||| ||| | | || | | | ||| ||||||| ||| ||||||| || | Sbjct 69603580 C-ACCTCTGGGAATCTTAGCTCCTAATTCTTCGTATTTCTTTGGGTTCTTTAAGAAGTGC 69603522 Query 289297 ACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 |||| ||| || ||| | |||||||| |||||||| || ||||| Sbjct 69603521 ACAAACTCCATAATTTCTTGCTTTGCCTCGTCACATCCAGCAACATC 69603475 >seq9 Length=96604005 Score = 84.2 bits (92), Expect = 6e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010 || ||||||||||||||| || |||||||||||||||| |||| ||||||||| ||| | Sbjct 62082069 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 62082128 Query 409011 TAGAACAttttttt 409024 || ||||||||| Sbjct 62082129 GGGACCATTTTTTT 62082142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470395373914203