Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq9 172 7e-37 seq1 138 1e-26 >seq9 Length=96604005 Score = 172 bits (190), Expect = 7e-37 Identities = 229/313 (73%), Gaps = 4/313 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| || ||||| ||||| ||||| || ||||| || | | |||| | | |||| Sbjct 49336090 GAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAGATTTGG 49336031 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| ||||||||||| | || |||||||| || ||||| ||| |||||| ||| Sbjct 49336030 ACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCGGCAAAA 49335971 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||| | || |||||| ||||||| || |||| | |||||| |||| Sbjct 49335970 AAGGCGAGAACGTGACTAATGAAGTGGTGCTCGTCAGCGGTGAGAGCTTCCCAGT-GACG 49335912 Query 869813 GTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | ||| || || || ||||| |||||||| | ||| || ||||| || ||||| Sbjct 49335911 AAGAACGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTTCTTGTA 49335852 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTTGTCGC 869930 ||| |||||||||| |||| |||| ||||| | ||| || |||| ||||| || Sbjct 49335851 CATTTCCCATACTTCTGGGTATTGGATCGGGAACA-TACAGAATCGGTCTGGGTTCGCGG 49335793 Query 869931 GCAACAGGGGTTC 869943 || ||| || || Sbjct 49335792 CCAGCAGTGGCTC 49335780 Score = 141 bits (156), Expect = 1e-27 Identities = 171/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 |||||||| | || | ||| || | |||||| ||||| |||||||| || ||||||||| Sbjct 49336330 CCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAG 49336271 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || ||||| ||| ||||| |||| | ||| ||||| || || || ||| | Sbjct 49336270 ATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCC------G 49336217 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 | |||||| ||||| ||||| ||||| ||||| ||| |||||||||| ||||||||| Sbjct 49336216 TCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 49336157 Query 869399 CGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 || || || ||| ||||||| | | || || | || || |||| ||||| Sbjct 49336156 CGGAAAAGACGGTTCTTTTCGTCGGAATCTTTTATGTAAGTCTCGAGAAGGAG 49336104 >seq1 Length=147124936 Score = 138 bits (152), Expect = 1e-26 Identities = 194/273 (71%), Gaps = 6/273 (2%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 |||||| || ||| ||||| ||||| || | | || ||||| | |||||||| Sbjct 98687295 ACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAATCCAGGCATTAACCCGCGCTT 98687354 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 || | |||||| || |||||||||||||| |||||||| ||||| || ||| || || Sbjct 98687355 TTTTAACCAAAATATCGCGCAGAAACTGCCGGAGAAAAATATGCCTTCTACGCAAGCGAA 98687414 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 |||| | ||| |||||||| | ||| ||| || |||||| || | ||||| Sbjct 98687415 AGCGATTAACCGTTCGGCAAAAGCTTCGCCGCC------GTCGATCCATTTGAAAGCCCA 98687468 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 ||||| ||||| ||| |||||||||| || | ||| | |||||| ||| ||||| Sbjct 98687469 ATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCGTGGAAGAGGCGGTTTTTTTC 98687528 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 || | || |||| ||| || |||| ||||| Sbjct 98687529 GGTGGCATCTTTGATATAAGTTTCGAGGAGGAG 98687561 Score = 138 bits (152), Expect = 1e-26 Identities = 126/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| |||||||||||||| ||||| || ||||| || | | ||||||| | |||| Sbjct 98687575 GAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAACGCACGCGCCTCTGCGATTTGG 98687634 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||||||| || |||| || || ||| |||||||| ||| |||||||| Sbjct 98687635 ACCTCTTTCATGAAGCGAACGGCGAGATTTTCGAGGACGATGCCATCGGATGCGGCGAAG 98687694 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCG 869791 || || ||||| || |||| |||||||| |||||| || Sbjct 98687695 AAGGCAAGGACATGACTGATGAAGTGGCGTTCGTCGGCG 98687733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6100949963672823