Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq9 188 1e-41 seq1 156 7e-32 >seq9 Length=96604005 Score = 188 bits (208), Expect = 1e-41 Identities = 212/284 (75%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 |||||||| | || | ||| || | |||||| |||||||||||||| || ||||||||| Sbjct 49336330 CCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAG 49336271 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || ||||| ||| ||||| ||| | ||| ||||| ||||| || ||| || Sbjct 49336270 ATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGTC---- 49336215 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||| ||||| |||||||| || ||||| ||| | |||||||| ||||||||| Sbjct 49336214 --GATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 49336157 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 || || || ||| ||| ||| | | || || | ||| || |||| ||||| ||| Sbjct 49336156 CGGAAAAGACGGTTCTTTTCGTCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 49336097 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAA 794663 |||| |||||||| |||||||| ||||| ||||| |||||||| Sbjct 49336096 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAA 49336053 Score = 150 bits (166), Expect = 3e-30 Identities = 195/267 (73%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| | ||||||||| |||||||| || | || ||||||||| || ||||| Sbjct 49336045 GCCTCGGAGATTTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCA 49335986 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| |||||| ||||||||||| ||||| | || ||||| ||||||| || |||| Sbjct 49335985 TCGGAGGCGGCAAAAAAGGCGAGAACGTGACTAATGAAGTGGTGCTCGTCAGCGGTGAGA 49335926 Query 796270 GAGACCCAGTGGACCGTG-TCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 | |||||| ||| | ||| || ||||| ||||| ||||||||||| || || Sbjct 49335925 GCTTCCCAGT-GACGAAGAACGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGC 49335867 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCG 796388 ||||| || |||||||| ||||||| | |||| |||| ||||||| | || || Sbjct 49335866 TTCGGCTTTCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGGAACATACAGAATCG 49335807 Query 796389 ATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 | |||||| || ||||| ||||| Sbjct 49335806 GTCTGGGTTCGCGGCCAGCAGTGGCTC 49335780 >seq1 Length=147124936 Score = 156 bits (172), Expect = 7e-32 Identities = 231/325 (71%), Gaps = 8/325 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCT 794398 |||||| || ||| |||||| ||||| | |||| | || ||||| | ||||||| Sbjct 98687295 ACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAAT-CCAGGCATTAACCCGCGCT 98687353 Query 794399 TCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 | || | |||||| || || ||||||||||| |||||||| ||||| || ||| || | Sbjct 98687354 TTTTTAACCAAAATATCGCGCAGAAACTGCCGGAGAAAAATATGCCTTCTACGCAAGCGA 98687413 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCC 794518 | ||| | ||| |||||||||| || ||| || |||||| || | |||| Sbjct 98687414 AAGCGATTAACCGTTCGGCAAAAGCTTCGCCGCCGTC------GATCCATTTGAAAGCCC 98687467 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | || || ||||| ||| | |||||||| || | ||| | |||||| ||| || | Sbjct 98687468 AATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCGTGGAAGAGGCGGTTTTTTT 98687527 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 || | || |||| || || |||| |||||| || |||| |||||||| || | Sbjct 98687528 CGGTGGCATCTTTGATATAAGTTTCGAGGAGGAGACTATACATCTCAGAGTGGATATTCT 98687587 Query 794639 CGATGGCGATCTGGAAGCCATAAAA 794663 |||||||||| ||||| |||||||| Sbjct 98687588 CGATGGCGATTTGGAATCCATAAAA 98687612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7908223736983941