Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq7 100 2e-16 seq11 89.7 4e-13 seq10 89.7 4e-13 >seq7 Length=127721098 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| || || || || |||||||| ||| | || ||| ||| | Sbjct 44509270 ATGCAGATATTTGTCAAGACCTTGACTGGGAAAACCATCACCCTGGAGGTTGAGAGCTCG 44509211 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | |||||| ||||||| || || || || | ||| |||||| Sbjct 44509210 -GATACGATTGACAATGTAAAAGCAAAGATTCAGGACAAGGAGGGAATTCCCCCGGATCA 44509152 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | ||| || || ||| ||||||||| ||| | || |||||||| Sbjct 44509151 GCAGAGGTTGATCTTTGCTGGGAAGCAGTTGGAGGACGGTCGAACCCTAGCTGACTACAA 44509092 Query 107735 CATTCAAAAGGAGTCTACGTTGCA 107758 || || ||||||||||| |||| Sbjct 44509091 TATCCAGAAGGAGTCTACTCTGCA 44509068 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| || ||||| |||||||| || || ||||||||||| | || |||| ||| Sbjct 44509499 AATGCAGATATTTGTGAAAACTTTGACCGGTAAAACCATTACGTTGGAGGTGGAGAGCTC 44509440 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||| || || | | || || ||||| ||||| || || | || || | Sbjct 44509439 -CGACACGGTTGATAATGTTAAGGCCAAGATCCAAGATAAGGAGGGTATCCCACCTGACC 44509381 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 | ||||| | |||| ||| || || ||||| ||||||| | || | |||||||| | Sbjct 44509380 AACAGAGGTTGATTTTTGCCGGAAAGCAGCTCGAGGACGGGAGGACCCTTGCGGACTATA 44509321 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||||||||||||||| || |||| |||| ||| Sbjct 44509320 ACATTCAAAAGGAGTCGACCCTGCATTTGGTTTTG 44509286 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||||||||||||||| || | || ||||| || || ||| | || ||| ||| Sbjct 44543737 ATGCAAATTTTTGTCAAGACCCTGACCGGCAAGACTATCACCCTTGAGGTGGAAAGCTC- 44543679 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || |||||| ||||||||||| | || |||| Sbjct 44543678 CGACACCATCGATAATGTCAAGGCAAAGATCCAAGATAAAGAAGGAATCCCACCAAATCA 44543619 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| ||||| | ||| |||| ||||| || | | ||| | || |||||||| Sbjct 44543618 ACAGAGGCTTATCTTTGCTAGTAAGCAGCTAGAATATGGTCGTACACTTGCTGACTACAA 44543559 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||| |||||||| || ||||| |||| Sbjct 44543558 CATTCAGAAGGAGTCCACCCTGCACTTGGT 44543529 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| ||||| | || ||||| ||||| ||| |||| |||| | Sbjct 86219704 ATGCAAATCTTTGTTAAAACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGAGTTCA 86219763 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || ||||| ||||| ||||| | || ||||||| Sbjct 86219764 GACACCATTGATAATGTGAAGGCTAAGATCCAAGATAAGGAAGGGATCCCACCGGATCAG 86219823 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | ||| || ||||| || ||||| | | || | || ||||||||| Sbjct 86219824 CAGAGGCTTATCTTTGCTGGCAAACAACTTGAGGATGGCCGCACGCTAGCCGACTACAAC 86219883 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| || || || || | ||| |||| Sbjct 86219884 ATTCAGAAAGAATCCACCCTTCACTTGGT 86219912 >seq11 Length=105699404 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGA-AACGGAGGCTGG 107614 ||||| ||||||||||| ||||| ||||||||||| || ||| | || | | ||| Sbjct 76982804 ATGCAGATTTTTGTCAAGACTTTGACAGGCAAAACAATCACCTTGGAGGTTGAAAGCT-C 76982862 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | | || || ||||||| ||||| ||||| | || ||||| Sbjct 76982863 CGATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCA 76982922 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || || || | ||| || ||||| |||| || | | || |||| || || || Sbjct 76982923 GCAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAA 76982982 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||| || |||||||| Sbjct 76982983 CATTCAGAAAGAGTCTAC 76983000 >seq10 Length=114683840 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || ||||| ||||| || || || || ||||| | ||| |||| ||| | Sbjct 64670998 ATGCAGATCTTCGTCAAGACTTTGACCGGTAAGACGATTACTTTAGAAGTGGAGAGCTCG 64670939 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || ||| |||||| || |||||||| | || ||||| Sbjct 64670938 -GATACGATTGATAACGTGAAAGCGAAGATTCAGGACAAAGAAGGAATTCCACCAGATCA 64670880 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || | |||| ||| || ||||| ||||| |||| | || |||| || ||||| Sbjct 64670879 GCAAAGGTTGATTTTTGCTGGGAAACAACTGGAAGACGGAAGGACTTTGGCTGATTACAA 64670820 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||||||||||| || Sbjct 64670819 TATTCAAAAGGAGTCCAC 64670802 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| ||||| | || || |||||||| ||| | || ||| ||| Sbjct 38459540 ATGCAGATCTTTGTGAAAACCCTTACTGGTAAAACCATCACCCTTGAGGTGGAAAGCTC- 38459598 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||||| | | | || || || || || ||||||||| | || || || Sbjct 38459599 CGATACTATTGATAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCA 38459658 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| ||||||| ||| || ||||| || ||||| | | ||| | || |||||||| Sbjct 38459659 ACAGAGGCTTATTTTTGCCGGAAAACAACTCGAGGATGGCCGAACTCTTGCCGACTACAA 38459718 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| ||||||||||| || Sbjct 38459719 CATCCAAAAGGAGTCCAC 38459736 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| ||||| | || || |||||||| || | || |||| | Sbjct 38459996 ATGCAGATATTTGTAAAAACCCTCACCGGAAAAACCATCACTTTGGAGGTGGAGAGTTCT 38460055 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || |||||| || || || || | || |||||| Sbjct 38460056 GATACCATTGATAATGTTAAGGCGAAGATTCAGGACAAGGAGGGTATTCCACCAGATCAG 38460115 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | |||| ||| || || ||||| ||||| | | || | ||||| || ||| Sbjct 38460116 CAGAGGTTGATTTTTGCCGGAAAGCAGCTCGAGGATGGGAGGACGCTTGCGGATTATAAC 38460175 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || ||||||||||| || ||||| ||||| || || |||| || |||| Sbjct 38460176 ATCCAAAAGGAGTCAACCCTGCACTTGGTGCTGCGACTGCGTGGTGGAA 38460224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398510164785691