Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq75419 80.6 1e-10 seq13 80.6 1e-10 seq7 80.6 1e-10 seq6 80.6 1e-10 >seq75419 Length=160230 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 38805 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 38864 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 38865 CTGCTCTATCCCGC 38878 >seq13 Length=144148110 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 87764151 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 87764092 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 87764091 CTGCTCTATCCCGC 87764078 >seq7 Length=127721098 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 98518944 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 98519003 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 98519004 CTGCTCTATCCCGC 98519017 >seq6 Length=121339338 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 86298856 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 86298797 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 86298796 CTGCTCTATCCCGC 86298783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181440556060578