Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq4 84.2 3e-11 seq1 84.2 3e-11 >seq4 Length=137675496 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 51969 AATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 52028 |||||| | | ||| | |||| ||||||||||||||||| |||||||||||| | ||| Sbjct 99863829 AATTTGTCAGTTACTTCACCATACAATGCTGATTTTGATGGTGATGAAATGAATATGCAT 99863888 Query 52029 GTTCCTCAATCATATG 52044 ||||||||||||| || Sbjct 99863889 GTTCCTCAATCATTTG 99863904 >seq1 Length=147124936 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 51969 AATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 52028 |||||| || | ||| | |||| |||||||||||||| || |||||||||||| | ||| Sbjct 134909001 AATTTGTCTGTTACTTCACCATACAATGCTGATTTTGACGGTGATGAAATGAATATGCAT 134908942 Query 52029 GTTCCTCAATCATATG 52044 ||||||||||||| || Sbjct 134908941 GTTCCTCAATCATTTG 134908926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634578794257320