Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq7 87.8 3e-12 >seq7 Length=127721098 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/140 (73%), Gaps = 11/140 (8%) Strand=Plus/Plus Query 81643 CAGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC----- 81697 ||||||| | |||||||| ||||| || |||| ||| |||| || ||| || ||| Sbjct 44509070 CAGAGTAGACTCCTTCTGGATATTGTAGTCAGCTAGGGTTCGACCGTCCTCCAACTGCTT 44509129 Query 81698 ------AAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGC 81751 |||||| | || || ||| | || | ||| | ||||| || ||||||||||| Sbjct 44509130 CCCAGCAAAGATCAACCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGAATCTTTGC 44509189 Query 81752 TTTTATATTTTCAATCGTAT 81771 ||||| ||| |||||||||| Sbjct 44509190 TTTTACATTGTCAATCGTAT 44509209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902559520383840