Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq13 96.9 8e-15 seq1 96.9 8e-15 seq4 84.2 5e-11 >seq13 Length=144148110 Score = 96.9 bits (106), Expect = 8e-15 Identities = 199/294 (68%), Gaps = 4/294 (1%) Strand=Plus/Plus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCT 279865 || || ||| |||| ||||| || | ||||| | |||| |||| | || |||||| Sbjct 67734114 GACTTCATTAATAAGGAACTTATTCTGTTTTCCATGGCTGATCTTCAAAGATCAATTCCT 67734173 Query 279866 CATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGA 279925 | | ||||| |||| ||| || || ||||| | ||| || |||||| || Sbjct 67734174 TCCATGGTTGATGGCCTGAAGCCTGGTCAACGGAAGATCCTTTTCTGTGCTTTCAAGAGG 67734233 Query 279926 AAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGT 279985 || || ||| | || ||| |||| || | ||||||||||| || ||| | | | Sbjct 67734234 AATTTTGTACATGAGGCAAAGGTTTCTCAATTTTCGGGTTATGTTTCGGAGCATTCTGCT 67734293 Query 279986 TATCATCACGGTGA--AGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTA 280043 || ||||| ||||| || |||| | | || | ||||| || | ||||| |||||| Sbjct 67734294 TACCATCATGGTGAGCAGAGTCTTTGTA--GTACCATTGTTGGAATGGCCCAGGATTTTG 67734351 Query 280044 TGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTA 280097 ||| |||||| ||||||| ||| || |||||||||||| |||||| Sbjct 67734352 TGGGCAGTAACAACATAAATCTTCTTCGTCCTGGGGGTCAATTTGGTACTCGTA 67734405 >seq1 Length=147124936 Score = 96.9 bits (106), Expect = 8e-15 Identities = 133/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 ||||||| ||||| |||| ||||| || ||| | ||||| || |||||||||| Sbjct 134909111 GACATTTAAATGATGGAGATTATGTTCTTTTTAATCGTCAACCTAGTCTCCATAAAATGT 134909052 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTAT--CTGGATTGACATTTCGATTAAATGTAAG 305424 | || |||| |||| | || | ||||| | | |||||||| ||||| | Sbjct 134909051 CAATCATGGGCCATAGAATCCGA--ATTATGCCATACTCTACATTTCGTCTAAATTTGTC 134908994 Query 305425 TGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 || | | | || || ||||| |||||||| || |||||||||||||||||||| ||||| Sbjct 134908993 TGTTACTTCACCATACAATGCTGATTTTGACGGTGATGAAATGAATATGCATGTTCCTCA 134908934 Query 305485 ATCA 305488 |||| Sbjct 134908933 ATCA 134908930 >seq4 Length=137675496 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 304937 CAGGCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAA 304996 ||||| | || |||||||| || ||| | || |||| | | |||| | ||| Sbjct 99863190 CAGGCTACACAGAGATCTGGGAGGCCTATTAAATCTATTTGTAGTAGGCTTAAGGCGAAA 99863249 Query 304997 GAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTA 305056 ||||| || ||| | |||||| | ||||| ||| | ||||| ||| || ||| ||| Sbjct 99863250 GAGGGCCGGATTAGGGGTAATTTGATGGGGAAAAGGGTTGACTTTTCAGCTCGAACAGTA 99863309 Query 305057 ATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAA--ATTGCTT 305114 || ||||| ||| | | || | | || ||||| | ||||| || ||| | ||||||| Sbjct 99863310 ATTACACCAGATCCAAATATCAATATTGATGAACTTGGAGTACC--TTGGAGTATTGCTT 99863367 Query 305115 TAAAACTAACATTTCCAGA 305133 |||| || |||| |||||| Sbjct 99863368 TAAATCTTACATATCCAGA 99863386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185665975744659