Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq10 104 2e-17 seq12 91.5 1e-13 seq7 89.7 3e-13 >seq10 Length=114683840 Score = 104 bits (114), Expect = 2e-17 Identities = 169/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| || | ||| | || | || || || |||||| || ||| Sbjct 38472174 AAAATCTGCATCCCACCCCTAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGGATG 38472115 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| | ||||| | | || || | ||||||||||||||||||||| | |||| Sbjct 38472114 TTGTAATCTGCAAGTGTCCTACCATCTTCGAGTTGTTTTCCGGCAAAAATCAACCTCTGC 38472055 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 |||||| | || | ||||| ||||| || || | | |||| || | || || Sbjct 38472054 TGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTT-GGCCTTGACATTATCGATAGTATC 38471996 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||||| |||| ||||| || ||||| || | |||||||||||||||||||| Sbjct 38471995 GGAGCTCTCCACCTCAAGGGTGATGGTCTTACCAGTAAGGGTTTTTACAAAGATCTGCAT 38471936 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | ||| | || | || || ||| ||| ||||| |||||||| |||| Sbjct 38459766 CCACCCCTTAGACGAAGGACTAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCA 38459707 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | |||||||||||||||||| | | ||| || ||| | || Sbjct 38459706 AGAGTTCGGCCATCCTCGAGTTGTTTTCCGGCAAAAATAAGCCTCTGTTGGTCTGGAGGA 38459647 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| ||||| | | |||| || | || ||| |||||| Sbjct 38459646 ATGCCTTCTTTGTCTTGGATTTT-GGCCTTGACATTATCAATAGTATCGGAGCTTTCCAC 38459588 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| |||||||| || | ||||| |||||||||||||| Sbjct 38459587 CTCAAGGGTGATGGTTTTACCAGTAAGGGTTTTCACAAAGATCTGCAT 38459540 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || |||||| ||| ||||| || |||||||| | | || | | |||| |||| |||| Sbjct 64670796 TGAAGAGTGGACTCCTTTTGAATATTGTAATCAGCCAAAGTCCTTCCGTCTTCCAGTTGT 64670855 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || ||||||||||| | ||||||||| | || | ||||||||||| ||| ||| Sbjct 64670856 TTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTC 64670915 Query 33667 TGTTTCAACATAGTCACGGTGTCGCTTGAT-TCCACGTCAACCGTGATCGTTTTACCTGT 33725 ||||| || | || || | | | ||||| || | || ||||| ||||| || Sbjct 64670916 GCTTTCACGTTATCAATCGTATC-CGAGCTCTCCACTTCTAAAGTAATCGTCTTACCGGT 64670974 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 || || || || ||||||||||| Sbjct 64670975 CAAAGTCTTGACGAAGATCTGCAT 64670998 Score = 98.7 bits (108), Expect = 7e-16 Identities = 168/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| | || || | |||||| || || || ||| ||||| ||| Sbjct 38460234 AAAATCTGCATTCCACCACGCAGTCGCAGCACCAAGTGCAGGGTTGACTCCTTTTGGATG 38460175 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 || ||||| | || || | | || || | || ||||||||||||||||| | |||| Sbjct 38460174 TTATAATCCGCAAGCGTCCTCCCATCCTCGAGCTGCTTTCCGGCAAAAATCAACCTCTGC 38460115 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 |||||| | || | ||| || ||||| ||| ||| | | ||||| || | ||| || Sbjct 38460114 TGATCTGGTGGAATACCCTCCTTGTCCTGAATCTTC-GCCTTAACATTATCAATGGTATC 38460056 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| || | ||||| ||||| || || | ||||||||||| |||||||| Sbjct 38460055 AGAACTCTCCACCTCCAAAGTGATGGTTTTTCCGGTGAGGGTTTTTACAAATATCTGCAT 38459996 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 || || |||||||| || || || ||||| ||||| ||||| | || || | | Sbjct 38473062 CGCAAAACCAAATGCAGGGTCGATTCCTTTTGGATGTTATAATCCGCAAGGGTCCTCCCA 38473003 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || || | || ||||| ||||||||||| | |||||| ||| | || | || || ||| Sbjct 38473002 TCCTCGAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTG 38472943 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCCACGTCAACCGTGA 33712 || ||||||| |||| |||| ||| | |||||| | | | || || || | |||| Sbjct 38472942 TCCTGAATTTTCGCTTTC-ACATTGTCAATGGTGTC-CGAGCTCTCGACCTCCAGGGTGA 38472885 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||||||| || || || || || || |||||||| Sbjct 38472884 TGGTTTTACCGGTCAAGGTCTTCACGAATATCTGCAT 38472848 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | |||||| | || | || ||||| ||| ||||| ||||||||||||| Sbjct 64671456 CCACCGCGCAAACGGAGGACGAGGTGGAGAGTTGACTCCTTTTGGATGTTGTAATCGGCC 64671515 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || |||| || | ||||||||||| || |||| ||||||||| ||| | || Sbjct 64671516 AAGGTCCGGCCGTCCTCAAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGG 64671575 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || ||||| ||| || | ||| | |||||| || || Sbjct 64671576 ATGCCTTCCTTATCTTGGATTTTGGCCTTC-ACGTTGTCGATCGTGTCGGAGCTCTCGAC 64671634 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | |||||||| || || |||| || || || ||||||||||| Sbjct 64671635 CTCGAGAGTGATCGTCTTGCCGGTTAGAGTCTTAACGAAGATCTGCAT 64671682 Score = 84.2 bits (92), Expect = 1e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | || || |||||||| || ||| || ||||| ||||| || || | Sbjct 38460678 CCTCCTCTAAGGCGCAAAACCAAATGCAGGGTGGATTCCTTTTGGATGTTATAGTCCGCA 38460619 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | || || | || ||||||||||||||||| | |||||| ||| | || Sbjct 38460618 AGCGTCCTCCCATCCTCAAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGAGGA 38460559 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCCA 33700 | || || ||||| ||| ||| | || ||||| ||| | |||||| | | | || | Sbjct 38460558 ATTCCCTCCTTGTCCTGAATCTTC-GCTTTAACATTGTCAATGGTGTC-CGAGCTCTCGA 38460501 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || | |||||||| || | || || || || |||||||| Sbjct 38460500 CCTCCAGTGTTACGGTTTTACCAGTCAGGGTCTTAACGAATATCTGCAT 38460452 >seq12 Length=146008498 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || || | || |||||| || || || || |||||||| | Sbjct 12766458 ACCACCACGAAGACGCAAGACAAGGTGGAGAGTGGATTCCTTCTGAATATTGTAATCAGC 12766517 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | | || ||||||||||| || || |||||||| | ||||||||| | || Sbjct 12766518 CAAAGTCCTTCCATCTTCCAATTGTTTCCCAGCGAAAATCAACCTTTGCTGATCTGGTGG 12766577 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||| ||| | | ||||| ||| | || ||| |||| Sbjct 12766578 AATTCCTTCTTTGTCCTGAATCTTC-GCCTTAACATTGTCGATCGTATCGGAACTCTCCA 12766636 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || ||||| || || ||||| || || || |||||||| Sbjct 12766637 CCTCCAAAGTTATGGTTTTCCCAGTCAACGTCTTGACGAAAATCTGCAT 12766685 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || ||||||||||||| | || || | || || | ||||||||||| || Sbjct 24218722 TCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCATCTTCGAGCTGTTTTCCGGCGAAG 24218663 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | ||||||||| ||| | || | ||||| ||||| ||||| ||| |||| Sbjct 24218662 ATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATTTTAGACTTC-ACATT 24218604 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | ||||||| || || || | ||||| || || || ||||| ||||| || Sbjct 24218603 ATCGATGGTGTCGGAGCTCTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAGGTTTTGAC 24218544 Query 33738 AAAGATCTGCATA 33750 |||||||||||| Sbjct 24218543 GAAGATCTGCATA 24218531 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || |||||||| || ||| ||| || || ||||||||||||| | ||||| |||| Sbjct 12766702 AATACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGACCGTCC 12766761 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || | |||||| |||||||| || | | ||||| ||| | || | ||||| ||||| Sbjct 12766762 TCGAGTTGTTTCCCGGCAAATATGAGCCTTTGCTGGTCTGGTGGGATGCCTTCCTTGTCT 12766821 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGAT 33713 || || || | || | ||| | |||||| ||| ||| || || | || || Sbjct 12766822 TGGATCTT-TGCCTTGACGTTGTCAATGGTGTCAGAGCT---TTCGACTTCCAAAGTTAT 12766877 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || || | ||||| || ||||||||||| Sbjct 12766878 GGTCTTGCCGGTCAGGGTTTTGACGAAGATCTGCAT 12766913 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || ||||||||||||| | || || |||| || | ||||| ||||| || Sbjct 24218950 TCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTCTTCGAGCTGTTTGCCGGCGAAG 24218891 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | ||||||||| ||| | || | ||||| ||||| |||||| | | |||| Sbjct 24218890 ATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTT-AGACTTTACATT 24218832 Query 33679 GTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTT 33734 || | |||||| ||| || || || | ||||| || || || ||||| ||||| Sbjct 24218831 ATCGATGGTGTCAGAGCT---CTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAGGTTTT 24218775 Query 33735 TACAAAGATCTGCATA 33750 || |||||||||||| Sbjct 24218774 GACGAAGATCTGCATA 24218759 >seq7 Length=127721098 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | || || |||||||| || || ||| ||||| ||||| || || | Sbjct 44509272 CCTCCTCTAAGGCGCAAAACCAAATGCAGGGTCGACTCCTTTTGAATGTTATAGTCCGCA 44509331 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | |||| || | || ||||||||||||||||| | ||| || || | || Sbjct 44509332 AGGGTCCTCCCGTCCTCGAGCTGCTTTCCGGCAAAAATCAACCTCTGTTGGTCAGGTGGG 44509391 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || || || || || | | ||||| || || |||||| ||||| Sbjct 44509392 ATACCCTCCTTATCTTGGATCTT-GGCCTTAACATTATCAACCGTGTCGGAGCTCTCCAC 44509450 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||| || |||||||| || || ||||| ||||| |||||||| Sbjct 44509451 CTCCAACGTAATGGTTTTACCGGTCAAAGTTTTCACAAATATCTGCAT 44509498 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| ||||| ||| || || || || ||||||| || || | | | || || Sbjct 86220368 ACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCAAGAGTCCTTCCATCTTCA 86220309 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||||||| ||||||||||| | || || ||| | || | ||||||||||| | Sbjct 86220308 AGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCCTGA 86220249 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || |||| |||| || | ||| || ||||| || | || || || || Sbjct 86220248 ATCTTGGCTTTC-ACATTATCAATGGTATCCGAACTCTCCACCTCCAAGGTAATTGTCTT 86220190 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| |||||||| ||||| Sbjct 86220189 TCCAGTGAGAGTTTTGACAAAGATTTGCAT 86220160 Score = 82.4 bits (90), Expect = 5e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | |||||| || || ||| || ||||| ||||||||||| | ||| ||||| | Sbjct 44542822 ACGAAGCACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGCGAGAGTGCGGCC 44542881 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || || | ||| || |||||||| ||||| | ||| || ||| | || | ||| ||||| Sbjct 44542882 ATCTTCAAGTTGCTTACCGGCAAAGATCAACCTCTGTTGGTCTGGGGGAATACCCTCTTT 44542941 Query 33654 GTC 33656 ||| Sbjct 44542942 GTC 44542944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328401865452480