Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq10 98.7 9e-16 seq12 93.3 4e-14 seq7 93.3 4e-14 >seq10 Length=114683840 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| |||||||||||| | || || ||| ||||| ||||| |||| | Sbjct 38459733 GACTCCTTTTGGATGTTGTAGTCGGCAAGAGTTCGGCCATCCTCGAGTTGTTTTCCGGCA 38459674 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || | |||||| |||||||| ||||||||||| || ||||| || | Sbjct 38459673 AAAATAAGCCTCTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTGACA 38459614 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | |||||||| ||||| || | || | ||||||||||| || ||||| Sbjct 38459613 TTATCAATAGTATCGGAGCTTTCCACCTCAAGGGTGATGGTTTTACCAGTAAGGGTTTTC 38459554 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 38459553 ACAAAGATCTGCAT 38459540 Score = 82.4 bits (90), Expect = 7e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| || || |||||||||||| || |||||| |||||||| ||||| |||| Sbjct 64671259 TTGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCCGTCTTCGAGTTGTTTTCCGG 64671318 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 |||| ||||| || || ||||| || |||||||| || || Sbjct 64671319 CGAAGATGAGACGTTGCTGGTCTGGGGGGATGCCTTCCTTGTC 64671361 >seq12 Length=146008498 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 131920 ATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTG 131979 ||||| | | ||||| || || |||||||| ||| || ||| || |||||||||||| Sbjct 12766938 ATGTAGGGTGGACTCCTTCTGGATGTTGTAATCGGCCAAGGTCCGGCCATCTTCGAGCTG 12766997 Query 131980 TTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTT 132039 ||| |||| |||| ||||| ||||| ||||| || || ||||| || || ||||| Sbjct 12766998 TTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGGATTTT 12767057 Query 132040 TTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGT 132099 || | | || | || |||| ||| ||||||| || | || || || || Sbjct 12767058 CGCCTTAACGTTGTCGATCGTGTCGGAACTCTCGACTTCGAGGGTGATGGTCTTGCCGGT 12767117 Query 132100 CAGAGTTTTTATGAAAATCTGCAT 132123 ||| || || | ||| |||||||| Sbjct 12767118 CAGGGTCTTAACGAAGATCTGCAT 12767141 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || |||||||| ||| || |||||| ||||||||||||||| |||| Sbjct 24218725 GATTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCATCTTCGAGCTGTTTTCCGGCG 24218666 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || ||||| || |||||||| || || ||||| |||| Sbjct 24218665 AAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATTTTAGACTTCACA 24218606 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| ||| ||||||| || | || || || || | ||||| Sbjct 24218605 TTATCGATGGTGTCGGAGCTCTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAGGTTTTG 24218546 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 24218545 ACGAAGATCTGCAT 24218532 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || ||||||||||| ||| || |||||| || ||||||||||| |||| Sbjct 24218497 GATTCCTTCTGAATGTTGTAATCGGCCAAGGTACGGCCGTCCTCGAGCTGTTTGCCGGCG 24218438 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || ||||| || |||||||| || || |||||| || | Sbjct 24218437 AAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTTACA 24218378 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||| || |||| || | || || || || || ||||| Sbjct 24218377 TTATCGATGGTGTCAGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTAAGGGTTTTG 24218318 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 24218317 ACGAAGATCTGCAT 24218304 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || |||||||| ||| || |||||| |||||||||||||| |||| Sbjct 24218953 GATTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTCTTCGAGCTGTTTGCCGGCG 24218894 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || ||||| || |||||||| || || |||||| || | Sbjct 24218893 AAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTTACA 24218834 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||| ||||||| || | || || || || | ||||| Sbjct 24218833 TTATCGATGGTGTCAGAGCTCTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAGGTTTTG 24218774 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 24218773 ACGAAGATCTGCAT 24218760 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || || || || ||| || |||||| ||||||||||||||| |||| Sbjct 24219181 GATTCCTTCTGGATATTATAATCGGCCAAGGTACGGCCATCTTCGAGCTGTTTGCCGGCG 24219122 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || ||||| || |||||||| || || ||||| || | Sbjct 24219121 AAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATTTTAGACTTGACA 24219062 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| ||| ||||||| || | || ||||| || | ||||| Sbjct 24219061 TTGTCGATGGTGTCGGAGCTCTCGACTTCGAGGGTGATGGTCTTACCGGTTAAGGTTTTG 24219002 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 24219001 ACGAAGATCTGCAT 24218988 >seq7 Length=127721098 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||||||||||||| | | | ||||| ||||||||||| ||||| | ||| | | Sbjct 44509283 GCGCAAAACCAAATGCAGGGTCGACTCCTTTTGAATGTTATAGTCCGCAAGGGTCCTCCC 44509342 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 || |||||||| || |||| | | || | | |||||| || || || || || || || Sbjct 44509343 GTCCTCGAGCTGCTTTCCGGCAAAAATCAACCTCTGTTGGTCAGGTGGGATACCCTCCTT 44509402 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 ||| || || || | | || || || |||| |||||| || | ||| | Sbjct 44509403 ATCTTGGATCTTGGCCTTAACATTATCAACCGTGTCGGAGCTCTCCACCTCCAACGTAAT 44509462 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| |||| |||||| | || |||||||| Sbjct 44509463 GGTTTTACCGGTCAAAGTTTTCACAAATATCTGCAT 44509498 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||||||||||||||||||||| | ||| || |||||| || || ||||||| | Sbjct 44510217 GACTCTTTTTGAATGTTGTAGTCAGCAAGGGTGCGACCATCTTCCAGTTGCTTACCGGCA 44510276 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 |||| || | |||||| || ||||| || ||||| ||||| Sbjct 44510277 AAGATAAGCCTCTGTTGGTCAGGAGGGATCCCTTCCTTATC 44510317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476161880748840