Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq11 91.5 1e-13 seq10 84.2 2e-11 seq12 82.4 7e-11 >seq11 Length=105699404 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || || || || ||| | ||||| | || || ||| | | Sbjct 76982804 ATGCAGATTTTTGTCAAGACTTTGACAGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 76982863 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || ||| ||| ||||| || || || || || |||||| Sbjct 76982864 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 76982923 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| ||||| | | |||||||||| | ||||||| || | | | ||||| || Sbjct 76982924 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 76982983 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 ||||| ||||| || ||| |||| Sbjct 76982984 ATTCAGAAAGAGTCTACCCTTCA 76983006 >seq10 Length=114683840 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | |||||||| ||||||| |||| ||||| | Sbjct 64671226 ATGCAAATCTTCGTTAAGACGCTTACCGGAAAGACGATCACTCTCGAGGTCGAGAGCTCT 64671167 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || ||| ||||| || || || || || ||||| || ||| Sbjct 64671166 GACACGATCGACAACGTGAAAGCCAAAATCCAAGACAAGGAAGGCATCCCGCCAGACCAG 64671107 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||| | || ||| || |||||||| || | | | | | |||||||||| Sbjct 64671106 CAACGTCTCATCTTCGCCGGAAAGCAACTCGAGGACGGGCGGACTTTAGCCGATTACAAT 64671047 Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378 || || || ||||| || ||||| Sbjct 64671046 ATCCAGAAGGAATCGACTCTTCAT 64671023 >seq12 Length=146008498 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/146 (74%), Gaps = 3/146 (2%) Strand=Plus/Minus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 ||||||||||| || || || |||||||| || | |||| | || || ||||| ||| Sbjct 139205687 GATAAAGAGGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTAGAA 139205628 Query 25328 GATGATAGAAATGTCAGC-GATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||| ||| | ||| ||||| || || ||||| || ||||| |||| |||| || Sbjct 139205627 GATGGCCGAACCCT-AGCTGATTATAACATCCAAAAGGAGTCCACTCTTCACCTAGTTTT 139205569 Query 25387 AAGATTGAGAGGAGGAA-AATGATCA 25411 ||| | |||||||||| ||||||| Sbjct 139205568 AAGGCTTAGAGGAGGAACCATGATCA 139205543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444674792818080